View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5839-10 (Length: 143)
Name: Solexa-NF5839-10
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5839-10 |
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| [»] chr6 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 131; Significance: 2e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 2e-68
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 31264105 - 31264247
Alignment:
| Q |
1 |
gagatgaagtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatattacggagatgctctattccatgtctt |
100 |
Q |
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| T |
31264105 |
gagatgaagtcataacattgagatccataaatataaattattactcatcggataaattaccatctttccaatattacggagatgctctattccatgtctt |
31264204 |
T |
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| Q |
101 |
tcaactttctttgaattcagacttctgttgagacaaatttgca |
143 |
Q |
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| T |
31264205 |
tcaactttccttgaattcagacttctgttgcgacaaatttgca |
31264247 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 69; Significance: 2e-31; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 22144698 - 22144834
Alignment:
| Q |
8 |
agtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagatgctctattccatgtctttcaact |
106 |
Q |
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| T |
22144698 |
agtcataacattgcgaaccataaatataaattattactcatcggataaatcaccatctgtccagtattgacggagatgctctattccacgtaattcaact |
22144797 |
T |
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| Q |
107 |
ttctttgaattcagacttctgttgagacaaatttgca |
143 |
Q |
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| T |
22144798 |
tcccttgaatttagacatttgttgagacgaatttgca |
22144834 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 69; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 8 - 143
Target Start/End: Original strand, 12212515 - 12212651
Alignment:
| Q |
8 |
agtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagatgctctattccatgtctttcaact |
106 |
Q |
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| T |
12212515 |
agtcataacattgagaaccataaatataaattattactcatcggataaatcatcatctgtctagtattgacggagatgctctattccacgtaattcaact |
12212614 |
T |
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| Q |
107 |
ttctttgaattcagacttctgttgagacaaatttgca |
143 |
Q |
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| T |
12212615 |
tcccttgaatttagacatctgttgagacgaatttgca |
12212651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 13815076 - 13814940
Alignment:
| Q |
8 |
agtcataacattgagatccataaatataaattattacttatcggataaattaccatctttccaatatt-acggagatgctctattccatgtctttcaact |
106 |
Q |
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| T |
13815076 |
agtcataacactgagaaccataagtataaattattactcatcagataaatcaccatctatccagtattgacggagatgctctattccacgtaattcaact |
13814977 |
T |
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| Q |
107 |
ttctttgaattcagacttctgttgagacaaatttgca |
143 |
Q |
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| T |
13814976 |
tcccttgaatttagacatctgttgagacgaatttgca |
13814940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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