View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5839-13 (Length: 141)
Name: Solexa-NF5839-13
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5839-13 |
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| [»] chr4 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 138; Significance: 2e-72; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 4 - 141
Target Start/End: Complemental strand, 29912355 - 29912218
Alignment:
| Q |
4 |
agagcgataaaccatacacatgaaacattggcaaaacagctagaaacacactcttggaacaagagtaatcatattgagaagcttcaaatctcacaaaaag |
103 |
Q |
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| T |
29912355 |
agagcgataaaccatacacatgaaacattggcaaaacagctagaaacacactcttggaacaagagtaatcatattgagaagcttcaaatctcacaaaaag |
29912256 |
T |
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| Q |
104 |
ctcaaccatagaaataagatttctatgagttaaaacaa |
141 |
Q |
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| T |
29912255 |
ctcaaccatagaaataagatttctatgagttaaaacaa |
29912218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 3e-46; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 4 - 141
Target Start/End: Original strand, 11452433 - 11452570
Alignment:
| Q |
4 |
agagcgataaaccatacacatgaaacattggcaaaacagctagaaacacactcttggaacaagagtaatcatattgagaagcttcaaatctcacaaaaag |
103 |
Q |
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| T |
11452433 |
agagcgctaaaccatataaatggaacataggcaaaacagctagatgcacagtcttggaactagagtaatcatattgagaagcttcaaacctcacaaaaag |
11452532 |
T |
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| Q |
104 |
ctcaaccatagaaataagatttctatgagttaaaacaa |
141 |
Q |
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| T |
11452533 |
ctcaaccatagcaataagatttctatgagttaaaacaa |
11452570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 6e-29
Query Start/End: Original strand, 9 - 141
Target Start/End: Original strand, 11441901 - 11442033
Alignment:
| Q |
9 |
gataaaccatacacatgaaacattggcaaaacagctagaaacacactcttggaacaagagtaatcatattgagaagcttcaaatctcacaaaaagctcaa |
108 |
Q |
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| T |
11441901 |
gataaaccatataaatggaacatcggcaaaacatctagatacacatttttggaactagagtattcatatttagaagcttcaaaccttgccgaaagctcaa |
11442000 |
T |
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| Q |
109 |
ccatagaaataagatttctatgagttaaaacaa |
141 |
Q |
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| T |
11442001 |
ccatagcaataagatttctatgagttaaaacaa |
11442033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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