View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5839-15 (Length: 140)
Name: Solexa-NF5839-15
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5839-15 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 128; Significance: 1e-66; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 128; E-Value: 1e-66
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 48277261 - 48277400
Alignment:
| Q |
1 |
agagacatggatgatggacaagttgaagaagatgaaggagacttcagaagtaattgctggtcctaagtggaaaaagtttcttagaaaaataagtgggtat |
100 |
Q |
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| T |
48277261 |
agagacatggatgatggacaagttgaagaagatgaaggagacttcagaagtgattgctggtcctaagtggaaaacgtttcttagaaaaataagtgggtat |
48277360 |
T |
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| Q |
101 |
gggaaaaaacaacaaaagcataggtttcaatatggtgcac |
140 |
Q |
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| T |
48277361 |
gggaaaaaacaacaaaagcataggtttcaatatgatgcac |
48277400 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 25246777 - 25246830
Alignment:
| Q |
19 |
caagttgaagaagatgaaggagacttcagaagtaattgctggtcctaagtggaa |
72 |
Q |
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| T |
25246777 |
caagttgaggaagatgaaagaggtttcagaagtgattgcaggtcctaagtggaa |
25246830 |
T |
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