View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5839-16 (Length: 140)
Name: Solexa-NF5839-16
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5839-16 |
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| [»] chr8 (8 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 125; Significance: 9e-65; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 125; E-Value: 9e-65
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 16790984 - 16791126
Alignment:
| Q |
1 |
aaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataat---tgt |
97 |
Q |
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| T |
16790984 |
aaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaataataaatgt |
16791083 |
T |
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| Q |
98 |
aatttaaatactttagtggcaagacttcaccttcgagaacaat |
140 |
Q |
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| T |
16791084 |
aatttaaatactttagtggcaagacttcaccttcaagaacaat |
16791126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 3e-43
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 16792900 - 16793038
Alignment:
| Q |
5 |
gtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata---attgtaatt |
101 |
Q |
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| T |
16792900 |
gtggttgcaaaaaagctgcgaggctttttccatcctgtgggaacaaataattgcaagtcagaatcttgctcatgaacatgcatcaatattcaatgtaatt |
16792999 |
T |
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| Q |
102 |
taaatactttagtggcaagacttcaccttcgagaacaat |
140 |
Q |
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| T |
16793000 |
taaatactttagtggcaagacttcgccttcgagaacaat |
16793038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 16617262 - 16617353
Alignment:
| Q |
1 |
aaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata |
92 |
Q |
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| T |
16617262 |
aaaggtggttgcaacaaagctgcgaggcattttccatcctgtgggaacaaatcattgcaagtcataatcttgctgatgaaaatacatcaata |
16617353 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 16629586 - 16629720
Alignment:
| Q |
1 |
aaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattgt |
97 |
Q |
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| T |
16629586 |
aaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaattt |
16629685 |
T |
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| Q |
98 |
aatttaaatactttagtggcaagacttcaccttcg |
132 |
Q |
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| T |
16629686 |
agttcaaacactttagtggcgagactccaccttcg |
16629720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 16638467 - 16638601
Alignment:
| Q |
1 |
aaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattgt |
97 |
Q |
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| T |
16638467 |
aaaggtggttggatcaaagacgggacgcattttccatcctgtgggaacaaatcattgcaagtcataatctagctgatgaaaatgcatcaatatcaaattt |
16638566 |
T |
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| Q |
98 |
aatttaaatactttagtggcaagacttcaccttcg |
132 |
Q |
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| T |
16638567 |
agttcaaacactttagtggcgagactccaccttcg |
16638601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 15110451 - 15110408
Alignment:
| Q |
1 |
aaaggtggttgcaacaaagctgcgaggcattttctatcctgtgg |
44 |
Q |
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| T |
15110451 |
aaaggtggttgcaacaaagctgcgatgcattttccatcctgtgg |
15110408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 16629278 - 16629369
Alignment:
| Q |
1 |
aaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata |
92 |
Q |
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| T |
16629278 |
aaaggcggttggatcaaagacgcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaata |
16629369 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 16638159 - 16638250
Alignment:
| Q |
1 |
aaaggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaata |
92 |
Q |
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| T |
16638159 |
aaaggcggttggatcaaagacgcgacgcatattccatcctgtgggaacaaatcattgcaagtcataatcttgcagaggaaaatgcatcaata |
16638250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 38877741 - 38877856
Alignment:
| Q |
3 |
aggtggttgcaacaaagctgcgaggcattttctatcctgtggaaacaaataattgcaagtcactatcttgctcatgaaaatgcatcaat---aattgtaa |
99 |
Q |
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|||||||||||||||||||| ||||||||||| || |||||| | |||| ||| ||||||| |||||||| ||||| |||||||||| || ||||| |
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| T |
38877741 |
aggtggttgcaacaaagctgtgaggcattttccatgctgtgggagtaaatcattacaagtcagaatcttgctgatgaacatgcatcaatgtcaaatgtaa |
38877840 |
T |
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| Q |
100 |
tttaaatactttagtg |
115 |
Q |
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| T |
38877841 |
attaaacactttagtg |
38877856 |
T |
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