View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5839-18 (Length: 136)

Name: Solexa-NF5839-18
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5839-18
Solexa-NF5839-18
[»] chr5 (6 HSPs)
chr5 (75-132)||(36956064-36956121)
chr5 (76-132)||(37069914-37069970)
chr5 (85-132)||(36947998-36948045)
chr5 (85-132)||(36971668-36971715)
chr5 (79-125)||(36935214-36935260)
chr5 (76-132)||(37079674-37079730)
[»] chr2 (1 HSPs)
chr2 (79-132)||(12493703-12493756)


Alignment Details
Target: chr5 (Bit Score: 54; Significance: 2e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 75 - 132
Target Start/End: Original strand, 36956064 - 36956121
Alignment:
Q  75 cctcacaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgtt 132  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  36956064 cctcacaattgtttcaacacttataatcacagcatcagtagcagcatgtttagctgtt 36956121  T

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Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 37069970 - 37069914
Alignment:
Q  76 ctcacaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgtt 132  Q
    |||||| | |||||||||||||||||||| || ||||||||||||||||||||||||    
T  37069970 ctcacattggtttcaacacttataatcactgcttcagtagcagcatgttttgctgtt 37069914  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 36947998 - 36948045
Alignment:
Q  85 gtttcaacacttataatcacagcatcagtagcagcatgttttgctgtt 132  Q
    |||||||| ||||||||||| |||||||||||||||||||||||||||    
T  36947998 gtttcaacccttataatcactgcatcagtagcagcatgttttgctgtt 36948045  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 85 - 132
Target Start/End: Original strand, 36971668 - 36971715
Alignment:
Q  85 gtttcaacacttataatcacagcatcagtagcagcatgttttgctgtt 132  Q
    |||||||||||||||||||| |||||||||||||||||||||| ||||    
T  36971668 gtttcaacacttataatcactgcatcagtagcagcatgttttggtgtt 36971715  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 125
Target Start/End: Original strand, 36935214 - 36935260
Alignment:
Q  79 acaattgtttcaacacttataatcacagcatcagtagcagcatgttt 125  Q
    |||||||||||||||||||||||||| || |||||||||||||||||    
T  36935214 acaattgtttcaacacttataatcactgcttcagtagcagcatgttt 36935260  T

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Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 76 - 132
Target Start/End: Complemental strand, 37079730 - 37079674
Alignment:
Q  76 ctcacaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgtt 132  Q
    |||||| | |||||||| ||||||||||| || ||||||||||||||||||||||||    
T  37079730 ctcacattggtttcaacccttataatcactgcttcagtagcagcatgttttgctgtt 37079674  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 79 - 132
Target Start/End: Complemental strand, 12493756 - 12493703
Alignment:
Q  79 acaattgtttcaacacttataatcacagcatcagtagcagcatgttttgctgtt 132  Q
    |||||||||||||||||||||||||| || ||||||||||||||||| ||||||    
T  12493756 acaattgtttcaacacttataatcactgcttcagtagcagcatgtttagctgtt 12493703  T

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