View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5839-19 (Length: 183)
Name: Solexa-NF5839-19
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5839-19 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 138; Significance: 2e-72; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 6240390 - 6240572
Alignment:
| Q |
1 |
gaagatagaagtttgcaagcctattgcatttctcattgatnnnnnnntctgccatagatttagctaagaatctagtgcttcatggaagaagcaaacacat |
100 |
Q |
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| T |
6240390 |
gaagatagaagtatgcaagcctattgcatttctcattgataaaaaaatctgccatagatttagctaagaatctaatgcttcatggaagaagcaaacacat |
6240489 |
T |
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| Q |
101 |
tgagggaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacaatttccaactgagggacaactag |
183 |
Q |
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| T |
6240490 |
tgagagaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacattgtcaaactgagggacaactag |
6240572 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 5e-70
Query Start/End: Original strand, 1 - 183
Target Start/End: Original strand, 6211455 - 6211636
Alignment:
| Q |
1 |
gaagatagaagtttgcaagcctattgcatttctcattgatnnnnnnntctgccatagatttagctaagaatctagtgcttcatggaagaagcaaacacat |
100 |
Q |
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| T |
6211455 |
gaagatagaagtttgcaagcctattgcatttctcattgataaaaaaatctgc-atagatttagctaagaatctaatgcttcatggaagaagcaaacacat |
6211553 |
T |
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| Q |
101 |
tgagggaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacaatttccaactgagggacaactag |
183 |
Q |
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| T |
6211554 |
tgagagaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcatacactgtccaactaagggacaactag |
6211636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 52; Significance: 4e-21; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 4e-21
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 17507487 - 17507328
Alignment:
| Q |
1 |
gaagatagaagtttgcaagcctattgcatttctcattgatnnnnnnntctgccatagatttagctaagaatctagtgctt-catggaagaagcaaacaca |
99 |
Q |
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| T |
17507487 |
gaagatagaagtttgcaagcctattgcattcctcattaacaataaatt-tgctatagatttagcaaagaatcaagtgttttcatgaaagaagcaaacaca |
17507389 |
T |
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| Q |
100 |
ttgagggaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaagatcataca |
160 |
Q |
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| T |
17507388 |
ttaaggcaaaatttcactttattagagaacaagtgaacaaagaaatgtttaaggtcataca |
17507328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 7e-17
Query Start/End: Original strand, 54 - 182
Target Start/End: Complemental strand, 23428055 - 23427927
Alignment:
| Q |
54 |
atagatttagctaagaatctagtgcttcatggaagaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaatgaagaaatgcttaaga |
153 |
Q |
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| T |
23428055 |
atagatttagctaaaaaccaagtgttgcatgtcagaagtaaacacatagaggcaatatttcactttatcagagaacaagtgaataaataaatgcttaagg |
23427956 |
T |
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| Q |
154 |
tcatacaatttccaactgagggacaacta |
182 |
Q |
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| T |
23427955 |
tcatacattgtcccattgaggaacaacta |
23427927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 1833919 - 1833998
Alignment:
| Q |
57 |
gatttagctaagaatctagtgcttcatggaagaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaa |
136 |
Q |
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| T |
1833919 |
gatttggctaagaatccagtgttgcatgaaagaaacaaacacattgaggcaagatttcactttataagagaacatgtgaa |
1833998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000004; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 54 - 118
Target Start/End: Complemental strand, 15489950 - 15489886
Alignment:
| Q |
54 |
atagatttagctaagaatctagtgcttcatggaagaagcaaacacattgagggaagatttcactt |
118 |
Q |
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| T |
15489950 |
atagatttagctaagaattcagtgttgcatggaagaagcaaacacattgagacaatatttcactt |
15489886 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 16943965 - 16943892
Alignment:
| Q |
63 |
gctaagaatctagtgcttcatggaagaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaa |
136 |
Q |
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| T |
16943965 |
gctaagaatctagtgttgcatggtagaagcaaacacatagagacaaggtttcactttatcagagagcaggtgaa |
16943892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000006
Query Start/End: Original strand, 63 - 136
Target Start/End: Complemental strand, 17014630 - 17014557
Alignment:
| Q |
63 |
gctaagaatctagtgcttcatggaagaagcaaacacattgagggaagatttcacttcaccagagaacaagtgaa |
136 |
Q |
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| T |
17014630 |
gctaagaatctagtgttgcatggtagaagcaaacacatagagacaaggtttcactttatcagagagcaggtgaa |
17014557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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