View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5839-2 (Length: 241)
Name: Solexa-NF5839-2
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5839-2 |
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Alignment Details
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 43588933 - 43588872
Alignment:
| Q |
160 |
aagaagaagaagaagataccgaagaatgtttcagcatcaaaagctctgccccatcacacaca |
221 |
Q |
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| T |
43588933 |
aagaagaagaagaagataccaaagaatgtttcagcatcaaaagctctgccccatcacacaca |
43588872 |
T |
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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 8 - 46
Target Start/End: Complemental strand, 43589088 - 43589050
Alignment:
| Q |
8 |
aatgttgagtttcagaatgatgaacttgttgtcccgtat |
46 |
Q |
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| T |
43589088 |
aatgttgagtttcagaatgatgaacttgttgtcccgtat |
43589050 |
T |
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