View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5839-22 (Length: 127)
Name: Solexa-NF5839-22
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5839-22 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 120; Significance: 8e-62; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 8e-62
Query Start/End: Original strand, 8 - 127
Target Start/End: Original strand, 29911934 - 29912053
Alignment:
| Q |
8 |
gaatcctcttagtagtgttggcgaaattcgtaaacaggttcaagagtgtggtgtgagttttgcttttactatacctgaaaatgtcaagaaactagagcta |
107 |
Q |
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| T |
29911934 |
gaatcctcttagtagtgttggcgaaattcgtaaacaggttcaagagtgtggtgtgagttttgcttttactatacctgaaaatgtcaagaaactagagcta |
29912033 |
T |
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| Q |
108 |
ttaggtggcattaatcccat |
127 |
Q |
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| T |
29912034 |
ttaggtggcattaatcccat |
29912053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 1e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 8 - 112
Target Start/End: Complemental strand, 11442311 - 11442207
Alignment:
| Q |
8 |
gaatcctcttagtagtgttggcgaaattcgtaaacaggttcaagagtgtggtgtgagttttgcttttactatacctgaaaatgtcaagaaactagagcta |
107 |
Q |
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| T |
11442311 |
gaatcctcttagtagtgttgatgaaattcgtaagcgggttaatgactgtggtgtgagttttgcttttactatacctgaaaatgtaaagaaattagaacca |
11442212 |
T |
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| Q |
108 |
ttagg |
112 |
Q |
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||||| |
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| T |
11442211 |
ttagg |
11442207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 8 - 104
Target Start/End: Complemental strand, 11452884 - 11452788
Alignment:
| Q |
8 |
gaatcctcttagtagtgttggcgaaattcgtaaacaggttcaagagtgtggtgtgagttttgcttttactatacctgaaaatgtcaagaaactagag |
104 |
Q |
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||||||| ||||||||||||||||||||||||| |||||| | |||||| ||||||| ||| |||||||||||||||||||| ||||||| |||||| |
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| T |
11452884 |
gaatccttttagtagtgttggcgaaattcgtaagcaggttaaggagtgtcgtgtgagcttttcttttactatacctgaaaatatcaagaagctagag |
11452788 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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