View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5839-24 (Length: 125)
Name: Solexa-NF5839-24
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5839-24 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 102; Significance: 4e-51; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 6240741 - 6240624
Alignment:
| Q |
8 |
accatcccactctcaatttttaggccaaatatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatactttgagatcaatgaca |
107 |
Q |
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| T |
6240741 |
accatcccactctcaatttttaggccaaatatctcctagtgttctttaaagtttaaacttggttataaatatttacttgcatactttgagatcaatgaca |
6240642 |
T |
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| Q |
108 |
acctatgcataatcatgc |
125 |
Q |
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| T |
6240641 |
acctatggataatcatgc |
6240624 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 9 - 125
Target Start/End: Complemental strand, 6211804 - 6211688
Alignment:
| Q |
9 |
ccatcccactctcaatttttaggccaaatatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatactttgagatcaatgacaa |
108 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
6211804 |
ccatcccactctcaatttttaggccaaatacctcctagtgttgtttaaagtttacacttagttataaatatttacttgcatactttgagatcaatgataa |
6211705 |
T |
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| Q |
109 |
cctatgcataatcatgc |
125 |
Q |
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| T |
6211704 |
cctatgcataatcatgc |
6211688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 3e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 10 - 112
Target Start/End: Complemental strand, 19610083 - 19609982
Alignment:
| Q |
10 |
catcccactctcaatttttaggccaaatatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatactttgagatcaatgacaac |
109 |
Q |
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| T |
19610083 |
catcccaatctcaatttttaggcctaatacctcttag-gttttttaagttttacacttagttataaatatttacttgcatacttttaaattgatgacaac |
19609985 |
T |
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| Q |
110 |
cta |
112 |
Q |
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||| |
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| T |
19609984 |
cta |
19609982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 94
Target Start/End: Original strand, 19115905 - 19115992
Alignment:
| Q |
8 |
accatcccactctcaatttttaggccaaa-tatctcctagtgttcttgaaagtttacacttagttataaatatttacttgcatacttt |
94 |
Q |
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||||||||||||||||||||||||||||| || |||||| ||||| || ||| ||||||| |||||||||||||||| |||||| |
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| T |
19115905 |
accatcccactctcaatttttaggccaaattacctcctatgattctttaagttttgcacttaggaataaatatttacttgcgtacttt |
19115992 |
T |
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