View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5839-25 (Length: 125)
Name: Solexa-NF5839-25
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5839-25 |
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| [»] chr8 (7 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 102; Significance: 4e-51; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 4e-51
Query Start/End: Original strand, 8 - 125
Target Start/End: Complemental strand, 16791716 - 16791599
Alignment:
| Q |
8 |
aatataatagtcaatgagatgaaaatcaaaataatcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagata |
107 |
Q |
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| T |
16791716 |
aatataataatcaatgagatgaaaatcaaaataatcaatgcaaatagttgaaaatagaatataaaatcacttacctttttatcataagtgaagtgagata |
16791617 |
T |
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| Q |
108 |
cgtggttccgattgatag |
125 |
Q |
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| T |
16791616 |
catggttctgattgatag |
16791599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 80; E-Value: 6e-38
Query Start/End: Original strand, 14 - 125
Target Start/End: Complemental strand, 16790304 - 16790193
Alignment:
| Q |
14 |
atagtcaatgagatgaaaatcaaaataatcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggt |
113 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||||||||| ||| |
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| T |
16790304 |
atagtcaatgagatgaaaatcaaaatattcaatgcaaatagttgaaaatagaatataaaaccatttacctttttatcataagtgaagtgagatacaaggt |
16790205 |
T |
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| Q |
114 |
tccgattgatag |
125 |
Q |
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|| ||| ||||| |
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| T |
16790204 |
tctgatcgatag |
16790193 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 56; E-Value: 1e-23
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 16616771 - 16616882
Alignment:
| Q |
14 |
atagtcaatgagatgaaaatcaaaataatcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggt |
113 |
Q |
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| T |
16616771 |
atagtcgatgagatgaaaatcaaaatggtcaatgcaaataattcaaaacagaatataaaatcatttacctttttatcagaagtaaagtgagatacaaggt |
16616870 |
T |
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| Q |
114 |
tccgattgatag |
125 |
Q |
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| T |
16616871 |
tttgattgatag |
16616882 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 16792410 - 16792521
Alignment:
| Q |
14 |
atagtcaatgagatgaaaatcaaaataatcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatacgtggt |
113 |
Q |
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||||||||||| |||||||||||||||||||||| |||| ||||||| | ||||||||||| |||| ||||||||| || ||||||||||||| ||| |
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| T |
16792410 |
atagtcaatgaaatgaaaatcaaaataatcaatgtgaataattgaaaacataatataaaatcatttacatttttatcagaaatgaagtgagatacatggc |
16792509 |
T |
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| Q |
114 |
tccgattgatag |
125 |
Q |
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| T |
16792510 |
tttgattgatag |
16792521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 16628471 - 16628565
Alignment:
| Q |
14 |
atagtcaatgagatgaaaatcaaaataatcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatac |
108 |
Q |
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| T |
16628471 |
atagtcaatgagataaaaatcaaaatgatcaacgcaaataattccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatac |
16628565 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 14 - 108
Target Start/End: Original strand, 16637352 - 16637446
Alignment:
| Q |
14 |
atagtcaatgagatgaaaatcaaaataatcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtgagatac |
108 |
Q |
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| T |
16637352 |
atagtcaatgagataaaaatcaaaatgatcaacgcaaataattccaaacagaatataaaaacatttacctttttatcggaagtgaagtgagatac |
16637446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 14 - 125
Target Start/End: Original strand, 16790497 - 16790609
Alignment:
| Q |
14 |
atagtcaatgagatgaaaatcaaaataatcaatgcaaatagttgaaaatagtatataaaatcacttac-ctttttatcataagtgaagtgagatacgtgg |
112 |
Q |
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||||||||||| || ||||||||||||||||||| ||||||| |||| | ||||||||||| |||| ||||||||| ||||||| |||||||| ||| |
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| T |
16790497 |
atagtcaatgaaatcaaaatcaaaataatcaatgtgaatagttcaaaagataatataaaatcatttacattttttatcagaagtgaaatgagatacatgg |
16790596 |
T |
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| Q |
113 |
ttccgattgatag |
125 |
Q |
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| T |
16790597 |
ctttgattgatag |
16790609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 4 - 108
Target Start/End: Original strand, 38877290 - 38877395
Alignment:
| Q |
4 |
aacaaatata-atagtcaatgagatgaaaatcaaaataatcaatgcaaatagttgaaaatagtatataaaatcacttacctttttatcataagtgaagtg |
102 |
Q |
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|||||||||| |||| | ||||||| |||||||||||||| |||| ||||||| |||| || |||||||| || | |||||||||||||| || ||||| |
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| T |
38877290 |
aacaaatatacatagcctatgagataaaaatcaaaataattaatgtgaatagttcaaaacagaatataaaaccattcacctttttatcatatgtcaagtg |
38877389 |
T |
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| Q |
103 |
agatac |
108 |
Q |
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|||||| |
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| T |
38877390 |
agatac |
38877395 |
T |
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