View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5839-26 (Length: 123)

Name: Solexa-NF5839-26
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5839-26
Solexa-NF5839-26
[»] chr4 (3 HSPs)
chr4 (57-123)||(737482-737548)
chr4 (64-107)||(3357237-3357280)
chr4 (64-107)||(3366903-3366946)
[»] scaffold0278 (2 HSPs)
scaffold0278 (57-107)||(15064-15114)
scaffold0278 (57-107)||(18398-18448)
[»] chr6 (1 HSPs)
chr6 (57-107)||(27642469-27642519)
[»] chr2 (1 HSPs)
chr2 (57-107)||(21754968-21755018)
[»] chr7 (2 HSPs)
chr7 (64-107)||(3423832-3423875)
chr7 (59-107)||(24321664-24321712)
[»] chr5 (1 HSPs)
chr5 (59-107)||(33283403-33283451)
[»] scaffold0125 (1 HSPs)
scaffold0125 (61-107)||(9119-9165)


Alignment Details
Target: chr4 (Bit Score: 51; Significance: 1e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 57 - 123
Target Start/End: Complemental strand, 737548 - 737482
Alignment:
Q  57 acataatcactccggcgcggcggcgcggccatcttggccggccagccaccggagaagaagatggcga 123  Q
    |||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||| ||||||    
T  737548 acataatcactccggcacggcggcgcggccaccttggccggccggccaccggagaagaaggtggcga 737482  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 3357237 - 3357280
Alignment:
Q  64 cactccggcgcggcggcgcggccatcttggccggccagccaccg 107  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  3357237 cactccggcgcggcggcgcggccatcttggccggccggccaccg 3357280  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 107
Target Start/End: Original strand, 3366903 - 3366946
Alignment:
Q  64 cactccggcgcggcggcgcggccatcttggccggccagccaccg 107  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  3366903 cactccggcgcggcggcgcggccatcttggccggccggccaccg 3366946  T

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Target: scaffold0278 (Bit Score: 43; Significance: 7e-16; HSPs: 2)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 15114 - 15064
Alignment:
Q  57 acataatcactccggcgcggcggcgcggccatcttggccggccagccaccg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  15114 acataatcactccggcgcggcggcgcggccatcttggccggctggccaccg 15064  T

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Target: scaffold0278; HSP #2
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 18448 - 18398
Alignment:
Q  57 acataatcactccggcgcggcggcgcggccatcttggccggccagccaccg 107  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||    
T  18448 acataatcactccggcgcggcggcgcggccatcttggccggctggccaccg 18398  T

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Target: chr6 (Bit Score: 43; Significance: 7e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 57 - 107
Target Start/End: Original strand, 27642469 - 27642519
Alignment:
Q  57 acataatcactccggcgcggcggcgcggccatcttggccggccagccaccg 107  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  27642469 acatcatcactccggcgcggcggcgcggccatcttggccggccggccaccg 27642519  T

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Target: chr2 (Bit Score: 43; Significance: 7e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 21755018 - 21754968
Alignment:
Q  57 acataatcactccggcgcggcggcgcggccatcttggccggccagccaccg 107  Q
    |||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  21755018 acataatcactccggcgcggcggcgcggccatcttggctggccggccaccg 21754968  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 64 - 107
Target Start/End: Complemental strand, 3423875 - 3423832
Alignment:
Q  64 cactccggcgcggcggcgcggccatcttggccggccagccaccg 107  Q
    |||||||||||||||||||||||||||||||||||| |||||||    
T  3423875 cactccggcgcggcggcgcggccatcttggccggccggccaccg 3423832  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 24321712 - 24321664
Alignment:
Q  59 ataatcactccggcgcggcggcgcggccatcttggccggccagccaccg 107  Q
    ||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  24321712 ataatcactccggcgcggcggcgcggccatcttgatcggccggccaccg 24321664  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 59 - 107
Target Start/End: Complemental strand, 33283451 - 33283403
Alignment:
Q  59 ataatcactccggcgcggcggcgcggccatcttggccggccagccaccg 107  Q
    ||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  33283451 ataatcactccggcgcggcggcgcggccatcttgatcggccggccaccg 33283403  T

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Target: scaffold0125 (Bit Score: 35; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 9119 - 9165
Alignment:
Q  61 aatcactccggcgcggcggcgcggccatcttggccggccagccaccg 107  Q
    |||||| ||||||||||||| |||||||||||||||||| |||||||    
T  9119 aatcacaccggcgcggcggcacggccatcttggccggccggccaccg 9165  T

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