View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5839-32 (Length: 116)

Name: Solexa-NF5839-32
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5839-32
Solexa-NF5839-32
[»] chr5 (3 HSPs)
chr5 (8-116)||(34232183-34232291)
chr5 (10-74)||(42129534-42129598)
chr5 (10-49)||(41712931-41712970)


Alignment Details
Target: chr5 (Bit Score: 101; Significance: 2e-50; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 8 - 116
Target Start/End: Original strand, 34232183 - 34232291
Alignment:
Q  8 agttacaatttttctcatctaagggaattggatttatcttctatcaacttgacaaactttcccatattaccagaaaaattcctaagtttggattattttg 107  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34232183 agttacaatttttctcatctaagggaattggatttgtcttctatcaacttgacaaactttcccatattatcagaaaaattcctaagtttggattattttg 34232282  T
Q  108 atttgtcca 116  Q
    |||||||||    
T  34232283 atttgtcca 34232291  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 10 - 74
Target Start/End: Complemental strand, 42129598 - 42129534
Alignment:
Q  10 ttacaatttttctcatctaagggaattggatttatcttctatcaacttgacaaactttcccatat 74  Q
    ||||||||||||| |||||    |||||||||| ||||||||||| |||||| | ||||||||||    
T  42129598 ttacaatttttcttatctatcaaaattggatttgtcttctatcaatttgacagaatttcccatat 42129534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 49
Target Start/End: Original strand, 41712931 - 41712970
Alignment:
Q  10 ttacaatttttctcatctaagggaattggatttatcttct 49  Q
    ||||||||||||||| ||||  ||||||||||||||||||    
T  41712931 ttacaatttttctcaactaatagaattggatttatcttct 41712970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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