View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5839-36 (Length: 73)

Name: Solexa-NF5839-36
Description: NF5839
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5839-36
Solexa-NF5839-36
[»] chr7 (5 HSPs)
chr7 (8-73)||(20606668-20606734)
chr7 (8-73)||(20609969-20610035)
chr7 (8-73)||(20612443-20612509)
chr7 (8-73)||(20607482-20607548)
chr7 (8-73)||(20643986-20644052)


Alignment Details
Target: chr7 (Bit Score: 59; Significance: 1e-25; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 20606734 - 20606668
Alignment:
Q  8 catcaaccatcgtagagtaatgatggtcggagacattaaagattatcaggaatct-aagcttctcat 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20606734 catcaaccatcgtagagtaatgatggtcggagacattaaagattatcaggaatctaaagcttctcat 20606668  T

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Target: chr7; HSP #2
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 20610035 - 20609969
Alignment:
Q  8 catcaaccatcgtagagtaatgatggtcggagacattaaagattatcaggaatct-aagcttctcat 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20610035 catcaaccatcgtagagtaatgatggtcggagacattaaagattatcaggaatctaaagcttctcat 20609969  T

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Target: chr7; HSP #3
Raw Score: 59; E-Value: 1e-25
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 20612509 - 20612443
Alignment:
Q  8 catcaaccatcgtagagtaatgatggtcggagacattaaagattatcaggaatct-aagcttctcat 73  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  20612509 catcaaccatcgtagagtaatgatggtcggagacattaaagattatcaggaatctaaagcttctcat 20612443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 20607548 - 20607482
Alignment:
Q  8 catcaaccatcgtagagtaatgatggtcggagacattaaagattatcaggaatct-aagcttctcat 73  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  20607548 catcaaccatcgtagagtaatgatggtcggagacattacagattatcaggaatctaaagcttctcat 20607482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-23
Query Start/End: Original strand, 8 - 73
Target Start/End: Complemental strand, 20644052 - 20643986
Alignment:
Q  8 catcaaccatcgtagagtaatgatggtcggagacattaaagattatcaggaatct-aagcttctcat 73  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||    
T  20644052 catcaaccatcgtagagtaatgatggtcagagacattaaagattatcaggaatctaaagcttctcat 20643986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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