View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5840-11 (Length: 150)
Name: Solexa-NF5840-11
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5840-11 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 130; Significance: 1e-67; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 30474123 - 30474272
Alignment:
| Q |
1 |
atgaagaagatgaggatcttttgaaaaaggtagatgctttgcggatggatttaagtgacaaagaagagttaattgaagacttaaaagatttgaaccaaac |
100 |
Q |
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| T |
30474123 |
atgaagaagatgaggatcttttgaaagaggtagatgctttgcggatggatttaagtgacaaagaagagttacttgaagacttaaatgatttgaacctaac |
30474222 |
T |
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| Q |
101 |
actaatcattaaggagcgtcagagtaatgatgagttgttggatgctcgaa |
150 |
Q |
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| T |
30474223 |
actaatcattaaggagcgtcggagtaatgatgagttgttggatgctcgaa |
30474272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 27 - 137
Target Start/End: Original strand, 30465905 - 30466015
Alignment:
| Q |
27 |
aaggtagatgctttgcggatggatttaagtgacaaagaagagttaattgaagacttaaaagatttgaaccaaacactaatcattaaggagcgtcagagta |
126 |
Q |
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| T |
30465905 |
aaggtagatgctttgctgatgaatttgagagacaaagaagagtcacttgaagagttagaagaatttaaccaaaaactaatcattaaggagcataagagta |
30466004 |
T |
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| Q |
127 |
atgatgagttg |
137 |
Q |
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| T |
30466005 |
atgatgagttg |
30466015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 30447098 - 30447213
Alignment:
| Q |
19 |
ttttgaaaaaggtagatgctttgcggatggatttaagtgacaaagaagagttaattgaagacttaaaagatttgaaccaaacactaatcattaaggagcg |
118 |
Q |
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| T |
30447098 |
ttttgaagaaggtagatgatttgcatatgggtttaagggagaaggaacagtcacttcaagacttagatgcactgaaccaaacactaatcatcaaggagcg |
30447197 |
T |
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| Q |
119 |
tcagagtaatgatgag |
134 |
Q |
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| T |
30447198 |
taagagtaacgatgag |
30447213 |
T |
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