View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5840-12 (Length: 146)
Name: Solexa-NF5840-12
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5840-12 |
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| [»] scaffold0031 (2 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: scaffold0031 (Bit Score: 94; Significance: 3e-46; HSPs: 2)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 94; E-Value: 3e-46
Query Start/End: Original strand, 11 - 108
Target Start/End: Original strand, 81168 - 81265
Alignment:
| Q |
11 |
accacatgagttagactcccttatcctcgattttttattttaaaaacaatatatattattaaccaaccccagcacaagcagtagctaaagggtaagag |
108 |
Q |
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| T |
81168 |
accacatgagttagactcccttatcctccattttttattttaaaaacaatatatattattaaccaaccccagcacaagcagtagctaaagggtaagag |
81265 |
T |
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Target: scaffold0031; HSP #2
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 109 - 146
Target Start/End: Original strand, 91346 - 91383
Alignment:
| Q |
109 |
tgtagtatacataaaaggccaaagtcagctgaacagaa |
146 |
Q |
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| T |
91346 |
tgtagtatacataaaaggccaaagtcagctgaacagaa |
91383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 47648826 - 47648875
Alignment:
| Q |
97 |
aaagggtaagagtgtagtatacataaaaggccaaagtcagctgaacagaa |
146 |
Q |
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| T |
47648826 |
aaagggcaagagggcagtatacataaaaggctaaagccagctgaacagaa |
47648875 |
T |
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