View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5840-17 (Length: 138)
Name: Solexa-NF5840-17
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5840-17 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 110; Significance: 8e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 110; E-Value: 8e-56
Query Start/End: Original strand, 3 - 138
Target Start/End: Complemental strand, 28364117 - 28363976
Alignment:
| Q |
3 |
agatatactttactcgattctagtaaca--gaaataatcctataattagaaattcctttatgc----taacaataacaaatccaagtgagattctaatat |
96 |
Q |
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| T |
28364117 |
agatatactttactcgattctagtaacaaagaaataatcctataattagaaattcctttatgcagtgtaacaataacaaatccaagtgagattctaatat |
28364018 |
T |
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| Q |
97 |
ggaaatactgcaaataagcacctgcaaagtacgaaatatcat |
138 |
Q |
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| T |
28364017 |
ggaaatactgtaaataagcacctgcaaagtacgaaatatcat |
28363976 |
T |
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