View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5840-18 (Length: 137)
Name: Solexa-NF5840-18
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5840-18 |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: scaffold0031 (Bit Score: 77; Significance: 4e-36; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 1 - 85
Target Start/End: Complemental strand, 91694 - 91610
Alignment:
| Q |
1 |
aaaggcaactaggagaaaagatggagaaacaagttaaggaaaaaatggcaaatatgtttagtcaaatgatgaatttcaaagtaag |
85 |
Q |
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| T |
91694 |
aaaggcaactaggggaaaagatggagaaacaagttgaggaaaaaatggcaaatatgtttagtcaaatgatgaatttcaaagtaag |
91610 |
T |
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Target: chr1 (Bit Score: 76; Significance: 2e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 2 - 85
Target Start/End: Complemental strand, 47649529 - 47649446
Alignment:
| Q |
2 |
aaggcaactaggagaaaagatggagaaacaagttaaggaaaaaatggcaaatatgtttagtcaaatgatgaatttcaaagtaag |
85 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
47649529 |
aaggcaactaggagaaaagatggagaaacaagttgaggaaaaaatggcaaatatgtttagtcaaatgatgaatttctaagtaag |
47649446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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