View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5840-19 (Length: 135)

Name: Solexa-NF5840-19
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5840-19
Solexa-NF5840-19
[»] chr4 (11 HSPs)
chr4 (8-134)||(3809801-3809927)
chr4 (8-134)||(3919957-3920083)
chr4 (30-119)||(4009803-4009892)
chr4 (8-119)||(3801371-3801482)
chr4 (20-119)||(4218440-4218539)
chr4 (48-134)||(3817421-3817507)
chr4 (30-134)||(3986802-3986906)
chr4 (29-118)||(3955723-3955812)
chr4 (29-119)||(4002105-4002195)
chr4 (8-119)||(3933196-3933307)
chr4 (29-119)||(4025032-4025122)
[»] chr5 (1 HSPs)
chr5 (31-131)||(13397758-13397858)


Alignment Details
Target: chr4 (Bit Score: 115; Significance: 8e-59; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 115; E-Value: 8e-59
Query Start/End: Original strand, 8 - 134
Target Start/End: Original strand, 3809801 - 3809927
Alignment:
Q  8 aacctcaaacagatcatctttatcaacttcattagcaataagtacttgcttatctctggctgttaaaattattctactatcagattgaaaccaatcacga 107  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |    
T  3809801 aacctcaaacagatcatctttatcaacttcattagcaataagtacttgcttatctctggctgttaaaattattctactatcatattgaaaccaatcacaa 3809900  T
Q  108 cttccaaataacttttccagctgatct 134  Q
    ||||||||||| |||||||||||||||    
T  3809901 cttccaaataatttttccagctgatct 3809927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 9e-28
Query Start/End: Original strand, 8 - 134
Target Start/End: Complemental strand, 3920083 - 3919957
Alignment:
Q  8 aacctcaaacagatcatctttatcaacttcattagcaataagtacttgcttatctctggctgttaaaattattctactatcagattgaaaccaatcacga 107  Q
    ||||||| | ||| |||| | ||||||||||||||   | ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||    
T  3920083 aacctcatatagaccatcatgatcaacttcattagtccttagtacttgcttatctctggatgttagaattattctactatcagattgaaaccaatcaaga 3919984  T
Q  108 cttccaaataacttttccagctgatct 134  Q
     ||||||||||| | || |||||||||    
T  3919983 gttccaaataacatctcgagctgatct 3919957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 3e-27
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 4009803 - 4009892
Alignment:
Q  30 tcaacttcattagcaataagtacttgcttatctctggctgttaaaattattctactatcagattgaaaccaatcacgacttccaaataac 119  Q
    ||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||| ||||||||||| || ||| |||||||    
T  4009803 tcaacttcattagcaataagtacttgcttatctctagttgttaaaattattctactatcggatcgaaaccaatcaagagttctaaataac 4009892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 8 - 119
Target Start/End: Original strand, 3801371 - 3801482
Alignment:
Q  8 aacctcaaacagatcatctttatcaacttcattagcaataagtacttgcttatctctggctgttaaaattattctactatcagattgaaaccaatcacga 107  Q
    ||||||| | |||||||| | ||  |||||||||| |||||||||||||||||||||   ||||| ||||||||||||||||||||||||||||||| ||    
T  3801371 aacctcatatagatcatcgtcatacacttcattaggaataagtacttgcttatctctacttgttacaattattctactatcagattgaaaccaatcaaga 3801470  T
Q  108 cttccaaataac 119  Q
     |||||||||||    
T  3801471 gttccaaataac 3801482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 5e-26
Query Start/End: Original strand, 20 - 119
Target Start/End: Original strand, 4218440 - 4218539
Alignment:
Q  20 atcatctttatcaacttcattagcaataagtacttgcttatctctggctgttaaaattattctactatcagattgaaaccaatcacgacttccaaataac 119  Q
    |||||| | |||||||||||||||||||||||||||||||||||| | ||||| ||| ||||||||||| ||| ||||||||||| || |||||||||||    
T  4218440 atcatcatcatcaacttcattagcaataagtacttgcttatctctagatgttacaatgattctactatcggatcgaaaccaatcaagagttccaaataac 4218539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 48 - 134
Target Start/End: Original strand, 3817421 - 3817507
Alignment:
Q  48 agtacttgcttatctctggctgttaaaattattctactatcagattgaaaccaatcacgacttccaaataacttttccagctgatct 134  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| || ||||||||||| | || |||||||||    
T  3817421 agtacttgcttatctctggatgttagaattattctactatcagattgaaaccaatcaagagttccaaataacatctcgagctgatct 3817507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 57; E-Value: 3e-24
Query Start/End: Original strand, 30 - 134
Target Start/End: Original strand, 3986802 - 3986906
Alignment:
Q  30 tcaacttcattagcaataagtacttgcttatctctggctgttaaaattattctactatcagattgaaaccaatcacgacttccaaataacttttccagct 129  Q
    |||||||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||| || || | |||||| | || ||||    
T  3986802 tcaacttcattatcaaaaagtacttgcttatctctggctgttagaattattctactatctgattgaaaccagtcaagagtttcgaataacatctctagct 3986901  T
Q  130 gatct 134  Q
    |||||    
T  3986902 gatct 3986906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 29 - 118
Target Start/End: Complemental strand, 3955812 - 3955723
Alignment:
Q  29 atcaacttcattagcaataagtacttgcttatctctggctgttaaaattattctactatcagattgaaaccaatcacgacttccaaataa 118  Q
    |||||||||||||| ||||||||||||||| |||||   ||||| ||||||||||||||||||| ||||||||||| || ||||||||||    
T  3955812 atcaacttcattagtaataagtacttgcttgtctctaattgttacaattattctactatcagatcgaaaccaatcaagagttccaaataa 3955723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 4002105 - 4002195
Alignment:
Q  29 atcaacttcattagcaataagtacttgcttatctctggctgttaaaattattctactatcagattgaaaccaatcacgacttccaaataac 119  Q
    |||||||||||||| ||||||||||||||| ||||| |  |||| |||||| |||||||| ||| ||||||||||| || |||||||||||    
T  4002105 atcaacttcattagtaataagtacttgcttgtctctagtcgttacaattatcctactatcggatcgaaaccaatcaagagttccaaataac 4002195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 3933307 - 3933196
Alignment:
Q  8 aacctcaaacagatcatctttatcaacttcattagcaataagtacttgcttatctctggctgttaaaattattctactatcagattgaaaccaatcacga 107  Q
    ||||||| | |||||||| |||||||||||||| | || ||| |||||||||| |||    |||| |||||||||||||||  || ||||||||||| ||    
T  3933307 aacctcacatagatcatcattatcaacttcattggtaacaagcacttgcttatttctactggttacaattattctactatctaatcgaaaccaatcaaga 3933208  T
Q  108 cttccaaataac 119  Q
      ||||||||||    
T  3933207 gatccaaataac 3933196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 119
Target Start/End: Original strand, 4025032 - 4025122
Alignment:
Q  29 atcaacttcattagcaataagtacttgcttatctctggctgttaaaattattctactatcagattgaaaccaatcacgacttccaaataac 119  Q
    |||||||||||||  ||||||||||||| | ||||| | ||| | |||||| |||||||||||| ||| ||||||| |  |||||||||||    
T  4025032 atcaacttcattacaaataagtacttgcatgtctctagttgtgacaattatcctactatcagatagaagccaatcaagtgttccaaataac 4025122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 2e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 31 - 131
Target Start/End: Original strand, 13397758 - 13397858
Alignment:
Q  31 caacttcattagcaataagtacttgcttatctctggctgttaaaattattctactatcagattgaaaccaatcacgacttccaaataacttttccagctg 130  Q
    ||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||| ||||||||||| || ||||||||||| | ||||||||    
T  13397758 caacttcattagcaataagtacttgcttatccctggttgttataattattctactatcagatcgaaaccaatcaagagttccaaataacatctccagctg 13397857  T
Q  131 a 131  Q
    |    
T  13397858 a 13397858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University