View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5840-2 (Length: 257)

Name: Solexa-NF5840-2

Description: NF5840

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] Solexa-NF5840-2

[»] chr3 (4 HSPs)

[»] chr1 (1 HSPs)

Alignment Details

Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 4)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 100; E-Value: 1e-49

Query Start/End: Original strand, 143 - 257

Target Start/End: Original strand, 34130355 - 34130470

Alignment:

Q	143	gctgaaaaccattaacatcattactattatattttctaattataa-tcatttctttggtccctgcagatggctttattataaactgagcagaaagttgaa	241	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34130355	gctgaaacccattaacatcattactgttatattttctaattataactcatttctttggtccctgcagatggctttattataaactgagcagaaagttgaa	34130454	T

Q	242	gaggatgaggagcctg	257	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34130455	gaggatgaggagcctg	34130470	T

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Target: chr3; HSP #2

Raw Score: 83; E-Value: 2e-39

Query Start/End: Original strand, 35 - 133

Target Start/End: Original strand, 42210973 - 42211071

Alignment:

Q	35	tggcaacttccctagagtgtttggaattgagccactaaaattgtttcttgccatcataagtgttttcaatccgttaacttcgattttaggaatgttccc	133	Q
		\|\|\|\|\|\| \| \|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42210973	tggcaaatcccctagactatttggaattgagccactaaaattgtttcttgccatcataagtgttttcaatccgttaacttcgattttaggaatgttccc	42211071	T

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Target: chr3; HSP #3

Raw Score: 69; E-Value: 5e-31

Query Start/End: Original strand, 45 - 133

Target Start/End: Original strand, 42223199 - 42223287

Alignment:

Q	45	cctagagtgtttggaattgagccactaaaattgtttcttgccatcataagtgttttcaatccgttaacttcgattttaggaatgttccc	133	Q
		\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	42223199	cctagactatttggaattgagccactaaaattgtttcttgccatcactagtgttttcaatccgtcaacttcgattttaggaatgttccc	42223287	T

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Target: chr3; HSP #4

Raw Score: 40; E-Value: 0.00000000000009

Query Start/End: Original strand, 44 - 107

Target Start/End: Original strand, 42198407 - 42198470

Alignment:

Q	44	ccctagagtgtttggaattgagccactaaaattgtttcttgccatcataagtgttttcaatccg	107	Q
		\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|
T	42198407	ccctagactatttggaattgagccactaaatttgtttctagccatcacaagtattttcaatccg	42198470	T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)

Name: chr1

Description:

Target: chr1; HSP #1

Raw Score: 35; E-Value: 0.00000000009

Query Start/End: Original strand, 191 - 257

Target Start/End: Original strand, 48559469 - 48559535

Alignment:

Q	191	tttctttggtccctgcagatggctttattataaactgagcagaaagttgaagaggatgaggagcctg	257	Q
		\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|
T	48559469	tttcttttgtcactgcagctggctttattagaagctgagcagaaagctgaagaggctgaggggcctg	48559535	T

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