View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5840-20 (Length: 135)

Name: Solexa-NF5840-20
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5840-20
Solexa-NF5840-20
[»] chr4 (12 HSPs)
chr4 (7-134)||(3810153-3810280)
chr4 (7-132)||(3817723-3817848)
chr4 (15-132)||(3932848-3932965)
chr4 (7-134)||(4218780-4218907)
chr4 (7-132)||(3987134-3987259)
chr4 (15-132)||(3801725-3801842)
chr4 (7-132)||(4010135-4010260)
chr4 (45-132)||(3919654-3919741)
chr4 (65-131)||(4025366-4025432)
chr4 (8-131)||(4002439-4002562)
chr4 (91-131)||(3954368-3954408)
chr4 (94-125)||(3963223-3963254)
[»] scaffold1360 (1 HSPs)
scaffold1360 (15-132)||(1843-1960)
[»] chr5 (1 HSPs)
chr5 (8-131)||(13398090-13398213)
[»] chr8 (1 HSPs)
chr8 (91-132)||(7069141-7069182)


Alignment Details
Target: chr4 (Bit Score: 118; Significance: 6e-61; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 118; E-Value: 6e-61
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 3810280 - 3810153
Alignment:
Q  7 tcaaaagaacttgttggaattgacaaatctattacacatttgaaatcattgttaaagaaagagtcacaaaaggcccctgttatcggaatttggggtatgg 106  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3810280 tcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccctgttatcggaatttggggtatgg 3810181  T
Q  107 gcggtattggcaagacaactaytgcaaa 134  Q
    | ||||||||||||||||||| ||||||    
T  3810180 gtggtattggcaagacaactattgcaaa 3810153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 76; E-Value: 9e-36
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 3817848 - 3817723
Alignment:
Q  7 tcaaaagaacttgttggaattgacaaatctattacacatttgaaatcattgttaaagaaagagtcacaaaaggcccctgttatcggaatttggggtatgg 106  Q
    ||||||||||||||||||||||||||| | ||| |  ||||||| ||||||||||||||||||||| || ||| || |||||| ||||||||||| ||||    
T  3817848 tcaaaagaacttgttggaattgacaaaccaattgcggatttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggggcatgg 3817749  T
Q  107 gcggtattggcaagacaactaytgca 132  Q
    ||||||||||||||||||||| ||||    
T  3817748 gcggtattggcaagacaactattgca 3817723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 72; E-Value: 2e-33
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 3932848 - 3932965
Alignment:
Q  15 acttgttggaattgacaaatctattacacatttgaaatcattgttaaagaaagagtcacaaaaggcccctgttatcggaatttggggtatgggcggtatt 114  Q
    ||||||||||||||||||| | ||| || ||||||| ||||||||||||||||||||| || ||| || |||||| ||||||||||| ||||||||||||    
T  3932848 acttgttggaattgacaaaccaattgcagatttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggggcatgggcggtatt 3932947  T
Q  115 ggcaagacaactaytgca 132  Q
    ||||||||||||| ||||    
T  3932948 ggcaagacaactattgca 3932965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 70; E-Value: 4e-32
Query Start/End: Original strand, 7 - 134
Target Start/End: Complemental strand, 4218907 - 4218780
Alignment:
Q  7 tcaaaagaacttgttggaattgacaaatctattacacatttgaaatcattgttaaagaaagagtcacaaaaggcccctgttatcggaatttggggtatgg 106  Q
    ||||||| |||| ||||||| |||||| | ||| |||||||||| ||||||||||| ||||||||   ||||| || |||||| ||||||||||||||||    
T  4218907 tcaaaaggacttattggaatggacaaaccaattgcacatttgaattcattgttaaacaaagagtcgggaaaggtccgtgttattggaatttggggtatgg 4218808  T
Q  107 gcggtattggcaagacaactaytgcaaa 134  Q
    ||||||||||||||||||||| ||||||    
T  4218807 gcggtattggcaagacaactattgcaaa 4218780  T

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Target: chr4; HSP #5
Raw Score: 68; E-Value: 6e-31
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 3987259 - 3987134
Alignment:
Q  7 tcaaaagaacttgttggaattgacaaatctattacacatttgaaatcattgttaaagaaagagtcacaaaaggcccctgttatcggaatttggggtatgg 106  Q
    ||||||| |||| |||||||||||||||| ||| ||||||| || |||||||||||||||||||||||||||| || ||| || |||||||||||||||     
T  3987259 tcaaaaggacttattggaattgacaaatcaattgcacatttaaattcattgttaaagaaagagtcacaaaaggtccgtgtgattggaatttggggtatgc 3987160  T
Q  107 gcggtattggcaagacaactaytgca 132  Q
      || |||||||||||||||| ||||    
T  3987159 ctggcattggcaagacaactattgca 3987134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 15 - 132
Target Start/End: Complemental strand, 3801842 - 3801725
Alignment:
Q  15 acttgttggaattgacaaatctattacacatttgaaatcattgttaaagaaagagtcacaaaaggcccctgttatcggaatttggggtatgggcggtatt 114  Q
    |||| ||||||| |||| | | ||| |||||||||| ||||||||||| ||||||||   ||||| || |||||| ||||||||||||||||||||||||    
T  3801842 acttattggaatggacagaccaattgcacatttgaattcattgttaaacaaagagtcgggaaaggtccgtgttattggaatttggggtatgggcggtatt 3801743  T
Q  115 ggcaagacaactaytgca 132  Q
    ||||||||||||| ||||    
T  3801742 ggcaagacaactattgca 3801725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 60; E-Value: 4e-26
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 4010260 - 4010135
Alignment:
Q  7 tcaaaagaacttgttggaattgacaaatctattacacatttgaaatcattgttaaagaaagagtcacaaaaggcccctgttatcggaatttggggtatgg 106  Q
    ||||||| |||| |||||||||||||||| ||| |||||||||| ||||||||| | ||||||||| |||||| |  ||| || ||||||||||| ||||    
T  4010260 tcaaaaggacttattggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtcagtgtcattggaatttggggcatgg 4010161  T
Q  107 gcggtattggcaagacaactaytgca 132  Q
    |  |||||||||||||||||| ||||    
T  4010160 gaagtattggcaagacaactattgca 4010135  T

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Target: chr4; HSP #8
Raw Score: 58; E-Value: 6e-25
Query Start/End: Original strand, 45 - 132
Target Start/End: Original strand, 3919654 - 3919741
Alignment:
Q  45 tttgaaatcattgttaaagaaagagtcacaaaaggcccctgttatcggaatttggggtatgggcggtattggcaagacaactaytgca 132  Q
    |||||| ||||||||||||||||||||| || ||| || |||||| ||||||||||| ||||||||||||||||||||||||| ||||    
T  3919654 tttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggggcatgggcggtattggcaagacaactattgca 3919741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.000000000000009
Query Start/End: Original strand, 65 - 131
Target Start/End: Complemental strand, 4025432 - 4025366
Alignment:
Q  65 aagagtcacaaaaggcccctgttatcggaatttggggtatgggcggtattggcaagacaactaytgc 131  Q
    |||||||| ||||||  | |||||| ||||||||||||||||| ||||||||||||||||||| |||    
T  4025432 aagagtcagaaaaggttcgtgttattggaatttggggtatgggaggtattggcaagacaactattgc 4025366  T

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Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.0000000000006
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 4002562 - 4002439
Alignment:
Q  8 caaaagaacttgttggaattgacaaatctattacacatttgaaatcattgttaaagaaagagtcacaaaaggcccctgttatcggaatttggggtatggg 107  Q
    |||||| |||| ||||||||| |||| |  || |||||||  |||||||||||    || ||| | |||||| || ||| || |||||||||||||||||    
T  4002562 caaaaggacttattggaattggcaaaccagttgcacatttagaatcattgttacgtcaacagttagaaaaggtccgtgtcattggaatttggggtatggg 4002463  T
Q  108 cggtattggcaagacaactaytgc 131  Q
     ||||||||||||||||||| |||    
T  4002462 aggtattggcaagacaactattgc 4002439  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 91 - 131
Target Start/End: Original strand, 3954368 - 3954408
Alignment:
Q  91 ggaatttggggtatgggcggtattggcaagacaactaytgc 131  Q
    ||||||||||||||||| ||||||||||||||||||| |||    
T  3954368 ggaatttggggtatgggaggtattggcaagacaactattgc 3954408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 94 - 125
Target Start/End: Original strand, 3963223 - 3963254
Alignment:
Q  94 atttggggtatgggcggtattggcaagacaac 125  Q
    |||||||||||||| |||||||||||||||||    
T  3963223 atttggggtatgggtggtattggcaagacaac 3963254  T

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Target: scaffold1360 (Bit Score: 72; Significance: 2e-33; HSPs: 1)
Name: scaffold1360
Description:

Target: scaffold1360; HSP #1
Raw Score: 72; E-Value: 2e-33
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 1843 - 1960
Alignment:
Q  15 acttgttggaattgacaaatctattacacatttgaaatcattgttaaagaaagagtcacaaaaggcccctgttatcggaatttggggtatgggcggtatt 114  Q
    ||||||||||||||||||| | ||| || ||||||| ||||||||||||||||||||| || ||| || |||||| ||||||||||| ||||||||||||    
T  1843 acttgttggaattgacaaaccaattgcagatttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggggcatgggcggtatt 1942  T
Q  115 ggcaagacaactaytgca 132  Q
    ||||||||||||| ||||    
T  1943 ggcaagacaactattgca 1960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 13398213 - 13398090
Alignment:
Q  8 caaaagaacttgttggaattgacaaatctattacacatttgaaatcattgttaaagaaagagtcacaaaaggcccctgttatcggaatttggggtatggg 107  Q
    |||||| |||| |||||||||| ||| | ||| |||||||  || |||||||| |  |||||||| ||||||  |  || || || ||||||||||||||    
T  13398213 caaaaggacttattggaattgagaaagcaattgcacatttagaaccattgttacatcaagagtcagaaaaggttcgcgtaattggtatttggggtatggg 13398114  T
Q  108 cggtattggcaagacaactaytgc 131  Q
     |||||||| |||||||||| |||    
T  13398113 aggtattggaaagacaactattgc 13398090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 91 - 132
Target Start/End: Complemental strand, 7069182 - 7069141
Alignment:
Q  91 ggaatttggggtatgggcggtattggcaagacaactaytgca 132  Q
    ||||||||||||||| | |||||||| |||||||||| ||||    
T  7069182 ggaatttggggtatgagtggtattggaaagacaactattgca 7069141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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