View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5840-22 (Length: 130)

Name: Solexa-NF5840-22
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5840-22
Solexa-NF5840-22
[»] chr6 (3 HSPs)
chr6 (48-130)||(11448142-11448224)
chr6 (48-130)||(2543735-2543817)
chr6 (48-86)||(16193850-16193888)
[»] chr7 (3 HSPs)
chr7 (50-130)||(17272784-17272864)
chr7 (48-130)||(43500067-43500148)
chr7 (73-130)||(29681849-29681906)
[»] chr1 (12 HSPs)
chr1 (47-130)||(50754809-50754892)
chr1 (48-130)||(28739304-28739386)
chr1 (48-130)||(9379903-9379985)
chr1 (48-124)||(28045410-28045486)
chr1 (48-130)||(9884926-9885008)
chr1 (48-130)||(44381908-44381991)
chr1 (48-115)||(35251165-35251234)
chr1 (52-115)||(49200058-49200122)
chr1 (91-130)||(6539593-6539632)
chr1 (81-127)||(15928097-15928143)
chr1 (55-92)||(6539683-6539720)
chr1 (48-130)||(10449447-10449521)
[»] chr3 (9 HSPs)
chr3 (48-130)||(22893891-22893973)
chr3 (48-130)||(11512472-11512554)
chr3 (82-130)||(20286989-20287037)
chr3 (82-130)||(31342092-31342140)
chr3 (57-113)||(29081598-29081655)
chr3 (47-92)||(25790897-25790942)
chr3 (55-92)||(49159502-49159539)
chr3 (52-84)||(5633181-5633213)
chr3 (55-105)||(48342214-48342264)
[»] chr2 (7 HSPs)
chr2 (48-130)||(12918618-12918700)
chr2 (48-130)||(39819148-39819230)
chr2 (48-130)||(15562289-15562371)
chr2 (82-130)||(7755421-7755469)
chr2 (4-44)||(8921552-8921592)
chr2 (55-106)||(39819060-39819112)
chr2 (48-92)||(12918498-12918543)
[»] chr5 (12 HSPs)
chr5 (48-127)||(5215560-5215639)
chr5 (47-130)||(36568789-36568872)
chr5 (64-130)||(19417530-19417595)
chr5 (75-130)||(29385303-29385358)
chr5 (76-130)||(25879328-25879382)
chr5 (54-114)||(7137637-7137698)
chr5 (75-130)||(9177863-9177918)
chr5 (55-106)||(29385394-29385446)
chr5 (57-130)||(9904168-9904242)
chr5 (47-85)||(41288004-41288042)
chr5 (55-92)||(19417442-19417479)
chr5 (47-121)||(4376339-4376414)
[»] chr4 (12 HSPs)
chr4 (48-130)||(31846782-31846864)
chr4 (48-130)||(31012212-31012294)
chr4 (64-130)||(6608434-6608500)
chr4 (82-130)||(6607420-6607468)
chr4 (49-130)||(2254617-2254698)
chr4 (55-121)||(46321429-46321496)
chr4 (50-115)||(32008336-32008402)
chr4 (50-104)||(15031965-15032020)
chr4 (82-130)||(30023630-30023679)
chr4 (55-106)||(31846900-31846952)
chr4 (55-106)||(54613030-54613082)
chr4 (60-114)||(44023038-44023092)
[»] chr8 (4 HSPs)
chr8 (48-130)||(43465171-43465256)
chr8 (48-130)||(16687512-16687595)
chr8 (47-130)||(31470829-31470914)
chr8 (48-92)||(1605038-1605082)
[»] scaffold0343 (1 HSPs)
scaffold0343 (47-92)||(12225-12270)
[»] scaffold0110 (1 HSPs)
scaffold0110 (48-102)||(26613-26667)


Alignment Details
Target: chr6 (Bit Score: 75; Significance: 6e-35; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 6e-35
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 11448224 - 11448142
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  11448224 ggataatacttgggtgacattgtggttggtgatattggtgacattaccaaccacaatgttataagtgtgcaaaacaacaaaaa 11448142  T

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Target: chr6; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 2543735 - 2543817
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  2543735 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtgtaaaacaacaaaaa 2543817  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 48 - 86
Target Start/End: Complemental strand, 16193888 - 16193850
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggt 86  Q
    ||||||||||||||||||||||| |||||||| ||||||    
T  16193888 ggataatacttgggtgacattgtggttggtgacattggt 16193850  T

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Target: chr7 (Bit Score: 73; Significance: 9e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 9e-34
Query Start/End: Original strand, 50 - 130
Target Start/End: Complemental strand, 17272864 - 17272784
Alignment:
Q  50 ataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17272864 ataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 17272784  T

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Target: chr7; HSP #2
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 43500148 - 43500067
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    |||||||| ||||| || ||||| ||||||||||||||||||||||||||||||||||||||||  || ||||||||||||||    
T  43500148 ggataatatttgggcgatattgtggttggtgatattggtgacattaccaaccacaatgttacaa-agtacaaaacaacaaaaa 43500067  T

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Target: chr7; HSP #3
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 29681906 - 29681849
Alignment:
Q  73 ttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  29681906 ttggtgacattggtgacattaccaaccacaatgttacaagtgtgtaaaacaacaaaaa 29681849  T

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Target: chr1 (Bit Score: 72; Significance: 4e-33; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 4e-33
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 50754892 - 50754809
Alignment:
Q  47 tggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  50754892 tggataatacttgggtgacattgtggttggtgacattggtgacattatcaaccacaatgttacaagtgtgcaaaacaacaaaaa 50754809  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 28739304 - 28739386
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  28739304 ggataatacttgggtgatattgtggttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaataacaaaaa 28739386  T

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Target: chr1; HSP #3
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 9379985 - 9379903
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    |||||||| |||||||||||||| |||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||    
T  9379985 ggataatatttgggtgacattgtggttggtgacattggtaacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 9379903  T

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Target: chr1; HSP #4
Raw Score: 65; E-Value: 5e-29
Query Start/End: Original strand, 48 - 124
Target Start/End: Complemental strand, 28045486 - 28045410
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaa 124  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  28045486 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtacaaaacaa 28045410  T

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Target: chr1; HSP #5
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 9885008 - 9884926
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    |||| |||||||||||| ||||| |||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||||||    
T  9885008 ggatgatacttgggtgatattgtggttggtgacattcgtgacattatcaaccacaatgttacaagtgtgcaaaacaacaaaaa 9884926  T

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Target: chr1; HSP #6
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 44381908 - 44381991
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    |||||||| |||||||||||||| ||||||||||||||||||||| |||||||||||||||||| |||| ||||  ||||||||    
T  44381908 ggataatatttgggtgacattgtggttggtgatattggtgacattgaccaaccacaatgttacacgtgtacaaagaaacaaaaa 44381991  T

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Target: chr1; HSP #7
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 48 - 115
Target Start/End: Original strand, 35251165 - 35251234
Alignment:
Q  48 ggataatacttgggtgacat--tgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgt 115  Q
    ||||||||||||| ||||||  | | ||||||||||||||||||||||||||||||||||||||||||||    
T  35251165 ggataatacttggatgacatgatatggttggtgatattggtgacattaccaaccacaatgttacaagtgt 35251234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 52 - 115
Target Start/End: Complemental strand, 49200122 - 49200058
Alignment:
Q  52 aatacttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgt 115  Q
    ||||||| ||||||||||| ||||||||||||| ||||||| |||||||||||||| ||||||||    
T  49200122 aatacttaggtgacattgtggttggtgatattgatgacattgaccaaccacaatgtcacaagtgt 49200058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 130
Target Start/End: Original strand, 6539593 - 6539632
Alignment:
Q  91 ttaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  6539593 ttaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 6539632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 15928097 - 15928143
Alignment:
Q  81 attggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaa 127  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||    
T  15928097 attggtgacattatcaaccacaatgttacaagtgtacaaaacaacaa 15928143  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 6539720 - 6539683
Alignment:
Q  55 acttgggtgacattgtcgttggtgatattggtgacatt 92  Q
    |||||||||||||||| |||| ||||||||||||||||    
T  6539720 acttgggtgacattgtggttgatgatattggtgacatt 6539683  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 10449447 - 10449521
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||||||||||||||| |||||||| ||||        |||||||||||||| |||||||| ||||  ||||||||    
T  10449447 ggataatacttgggtgacattgtggttggtgacattg--------accaaccacaatgtcacaagtgtacaaagaaacaaaaa 10449521  T

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Target: chr3 (Bit Score: 71; Significance: 1e-32; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 22893891 - 22893973
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  22893891 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaagtgtacaaaacaacaaaaa 22893973  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 11512554 - 11512472
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11512554 ggataatacttgggtgacattatggttggtgacattggtgacattaccaaccacaatgttacaagtgtgcaaaacatcaaaaa 11512472  T

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Target: chr3; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 20287037 - 20286989
Alignment:
Q  82 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20287037 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 20286989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 31342140 - 31342092
Alignment:
Q  82 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31342140 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 31342092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 57 - 113
Target Start/End: Original strand, 29081598 - 29081655
Alignment:
Q  57 ttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagt 113  Q
    |||||||||||||| |||||||| || ||||||||| |||||||||||||| ||||||    
T  29081598 ttgggtgacattgtggttggtgacatcggtgacattgaccaaccacaatgtcacaagt 29081655  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 25790942 - 25790897
Alignment:
Q  47 tggataatacttgggtgacattgtcgttggtgatattggtgacatt 92  Q
    ||||||||| |||||||||||| | |||||||| ||||||||||||    
T  25790942 tggataatatttgggtgacattatggttggtgacattggtgacatt 25790897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 49159539 - 49159502
Alignment:
Q  55 acttgggtgacattgtcgttggtgatattggtgacatt 92  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  49159539 acttgggtgacattgtggttggtgacattggtgacatt 49159502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 5633213 - 5633181
Alignment:
Q  52 aatacttgggtgacattgtcgttggtgatattg 84  Q
    ||||||||||||||||||| |||||||||||||    
T  5633213 aatacttgggtgacattgtggttggtgatattg 5633181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 48342214 - 48342264
Alignment:
Q  55 acttgggtgacattgtcgttggtgatattggtgacatta-ccaaccacaatg 105  Q
    |||||||||||||||| |||||||| ||| ||||||||| ||||||||||||    
T  48342214 acttgggtgacattgtggttggtgacatt-gtgacattagccaaccacaatg 48342264  T

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Target: chr2 (Bit Score: 71; Significance: 1e-32; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 12918700 - 12918618
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  12918700 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatgttacaaatgtgcaaaacaacaaaaa 12918618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 71; E-Value: 1e-32
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 39819230 - 39819148
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  39819230 ggataatacttgggtgacattgtggttggtgacattggtgacattaccaaccacaatattacaagtgtgcaaaacaacaaaaa 39819148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 67; E-Value: 3e-30
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 15562371 - 15562289
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    |||||||| |||||||||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15562371 ggataatatttgggtgacattatggttggtgatattggtgacattaccaatcacaatgttacaagtgtgcaaaacaacaaaaa 15562289  T

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Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 7755469 - 7755421
Alignment:
Q  82 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    |||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  7755469 ttggtgacattaccaatcacaatgttacaagtgtacaaaacaacaaaaa 7755421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 8921592 - 8921552
Alignment:
Q  4 caagcaaccaaagaaccttaccaataattagtttacctgtt 44  Q
    ||||||| ||||||||||| |||||||||||||||||||||    
T  8921592 caagcaagcaaagaaccttgccaataattagtttacctgtt 8921552  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 39819060 - 39819112
Alignment:
Q  55 acttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgt 106  Q
    |||||||||||||||| |||||||| ||||||||||||  |||||||||||||    
T  39819060 acttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgt 39819112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 48 - 92
Target Start/End: Original strand, 12918498 - 12918543
Alignment:
Q  48 ggataatactt-gggtgacattgtcgttggtgatattggtgacatt 92  Q
    ||||||||||| |||||||||||| |||||||| ||||||||||||    
T  12918498 ggataatactttgggtgacattgtggttggtgacattggtgacatt 12918543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 2e-28; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 2e-28
Query Start/End: Original strand, 48 - 127
Target Start/End: Original strand, 5215560 - 5215639
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaa 127  Q
    ||||||||||||||||||||||| |||||| | ||||||||||||||||||||||||||||||||||| |||||||||||    
T  5215560 ggataatacttgggtgacattgtggttggtaacattggtgacattaccaaccacaatgttacaagtgtacaaaacaacaa 5215639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 36568872 - 36568789
Alignment:
Q  47 tggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||||  |||||||||| |||||||| ||| ||||||| | ||||||||||||||||||||| ||||||||||||||    
T  36568872 tggataatacttatgtgacattgtggttggtgacattagtgacataatcaaccacaatgttacaagtgtacaaaacaacaaaaa 36568789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 19417595 - 19417530
Alignment:
Q  64 acattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  19417595 acattgtggttggtgacattggtgacattaccaaccacaatgtt-caagtgtgcaaaacaacaaaaa 19417530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 29385303 - 29385358
Alignment:
Q  75 ggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||| ||| |||| |||||||||||||||||||||||||||||||||||||||||    
T  29385303 ggtgacattagtgatattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 29385358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 25879328 - 25879382
Alignment:
Q  76 gtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    |||||||||||||||||| |||||||||||||||||||||  ||||||| |||||    
T  25879328 gtgatattggtgacattatcaaccacaatgttacaagtgtataaaacaataaaaa 25879382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 54 - 114
Target Start/End: Original strand, 7137637 - 7137698
Alignment:
Q  54 tacttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtg 114  Q
    ||||||||||||||||  |||||||| |||||||||||| |||||||||||||| |||||||    
T  7137637 tacttgggtgacattgcagttggtgaaattggtgacattgaccaaccacaatgtcacaagtg 7137698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 130
Target Start/End: Original strand, 9177863 - 9177918
Alignment:
Q  75 ggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||| |||| ||||| ||||||||||||||||| ||||||||||||||| |||||    
T  9177863 ggtgacattgatgacactaccaaccacaatgttataagtgtgcaaaacaataaaaa 9177918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 29385446 - 29385394
Alignment:
Q  55 acttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgt 106  Q
    |||||||||||||||| |||||||| ||||||||||||  |||||||||||||    
T  29385446 acttgggtgacattgtggttggtgacattggtgacattggccaaccacaatgt 29385394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 57 - 130
Target Start/End: Original strand, 9904168 - 9904242
Alignment:
Q  57 ttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    |||||||||||| | |||| ||| |||||| | ||| | ||||||||||||||||||||| ||||| ||||||||    
T  9904168 ttgggtgacattatggttgttgacattggtaatattgatcaaccacaatgttacaagtgtacaaaaaaacaaaaa 9904242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 47 - 85
Target Start/End: Complemental strand, 41288042 - 41288004
Alignment:
Q  47 tggataatacttgggtgacattgtcgttggtgatattgg 85  Q
    ||||||||| |||||||||||||| ||||||||||||||    
T  41288042 tggataatatttgggtgacattgtggttggtgatattgg 41288004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 19417442 - 19417479
Alignment:
Q  55 acttgggtgacattgtcgttggtgatattggtgacatt 92  Q
    |||||||||||||||| |||||||| ||||||||||||    
T  19417442 acttgggtgacattgtggttggtgacattggtgacatt 19417479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 47 - 121
Target Start/End: Original strand, 4376339 - 4376414
Alignment:
Q  47 tggataatacttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgtgcaaaa 121  Q
    ||||||||||||| |||||||||| |||||| | ||| ||| ||||   |||||||||||| |||||||| |||||    
T  4376339 tggataatacttgagtgacattgtggttggtaacattcgtgccattggtcaaccacaatgtcacaagtgtacaaaa 4376414  T

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Target: chr4 (Bit Score: 63; Significance: 8e-28; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 8e-28
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 31846782 - 31846864
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||||||||||||| | |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  31846782 ggataatacttgggtgacattatggttggtgacattcgtgacattaccaaccaaaatgttacaagtgtgcaaaacaacaaaaa 31846864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 31012294 - 31012212
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||| ||||||||||| |||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||||||    
T  31012294 ggataatacttaggtgacattgtggttggtgacattagtgacattaccaaccacaatattacaagtatgcaaaacaacaaaaa 31012212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 64 - 130
Target Start/End: Complemental strand, 6608500 - 6608434
Alignment:
Q  64 acattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6608500 acattgtggttggtgacattggtgacattaccaaccacaatgttacaagtctgcaaaacaacaaaaa 6608434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 82 - 130
Target Start/End: Original strand, 6607420 - 6607468
Alignment:
Q  82 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  6607420 ttggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 6607468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 49 - 130
Target Start/End: Complemental strand, 2254698 - 2254617
Alignment:
Q  49 gataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||  |||||||||| ||| |||| |||| ||| |||||||| ||||||||||||||||| ||||||||||||||    
T  2254698 gataatacttatgtgacattgtggttcgtgacattgatgatattaccaatcacaatgttacaagtgtacaaaacaacaaaaa 2254617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 121
Target Start/End: Complemental strand, 46321496 - 46321429
Alignment:
Q  55 acttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgtgcaaaa 121  Q
    ||||| |||||||||| ||||||||||||||||||||| |||||||||||||| |||| ||| |||||    
T  46321496 acttgagtgacattgtggttggtgatattggtgacattgaccaaccacaatgtcacaactgtacaaaa 46321429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 50 - 115
Target Start/End: Complemental strand, 32008402 - 32008336
Alignment:
Q  50 ataatacttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgt 115  Q
    |||| |||||||||||||||| |||||||| ||| |||| ||| |||||||| ||||||||||||||    
T  32008402 ataacacttgggtgacattgtggttggtgacattagtgatattgaccaaccaaaatgttacaagtgt 32008336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 50 - 104
Target Start/End: Original strand, 15031965 - 15032020
Alignment:
Q  50 ataatacttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaat 104  Q
    |||| |||||||||||||||| |||| ||||||| |||||||| ||||||||||||    
T  15031965 ataacacttgggtgacattgtggttgatgatattcgtgacattgaccaaccacaat 15032020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 82 - 130
Target Start/End: Complemental strand, 30023679 - 30023630
Alignment:
Q  82 ttggtgacatt-accaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||| |||||||||||||| |||||||| ||||| ||||||||    
T  30023679 ttggtgacattgaccaaccacaatgtcacaagtgtacaaaaaaacaaaaa 30023630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 106
Target Start/End: Complemental strand, 31846952 - 31846900
Alignment:
Q  55 acttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgt 106  Q
    |||||||||||||||| |||||||| |||||||| |||  |||||||||||||    
T  31846952 acttgggtgacattgtggttggtgacattggtgatattggccaaccacaatgt 31846900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 54613030 - 54613082
Alignment:
Q  55 acttgggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgt 106  Q
    |||||||||||||||| |||||||| ||| ||| |||| ||||||||||||||    
T  54613030 acttgggtgacattgtggttggtgacattagtggcattgaccaaccacaatgt 54613082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 44023092 - 44023038
Alignment:
Q  60 ggtgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtg 114  Q
    ||||||||||| || ||||| ||| |||||||| ||||||||||||||||||||||    
T  44023092 ggtgacattgtggt-ggtgacattagtgacattgaccaaccacaatgttacaagtg 44023038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 3e-21; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 48 - 130
Target Start/End: Complemental strand, 43465256 - 43465171
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacattaccaaccac---aatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||||| ||||||| | |||||||| |||||||| ||||||||||||   |||||||||||||||||||||||||||||    
T  43465256 ggataatacttggatgacattctggttggtgacattggtgaaattaccaaccaccacaatgttacaagtgtgcaaaacaacaaaaa 43465171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 48 - 130
Target Start/End: Original strand, 16687512 - 16687595
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacatta-ccaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||||| ||||||||| |||||||||||||||||||||| | |||||||||||  ||||||| |||| ||| |||||    
T  16687512 ggataatacttggatgacattgtggttggtgatattggtgacattagctaaccacaatgtcccaagtgtacaaagcaaaaaaaa 16687595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 47 - 130
Target Start/End: Complemental strand, 31470914 - 31470829
Alignment:
Q  47 tggataatacttggg-tgacattgtcgttggtgatattggtgacatt-accaaccacaatgttacaagtgtgcaaaacaacaaaaa 130  Q
    ||||||||||||||| ||| ||||| ||||||| |||||||||||||  ||||||||||||| |||||||| ||||  ||||||||    
T  31470914 tggataatacttggggtgatattgtggttggtggtattggtgacattggccaaccacaatgtcacaagtgtacaaagaaacaaaaa 31470829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 48 - 92
Target Start/End: Complemental strand, 1605082 - 1605038
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgacatt 92  Q
    ||||||||||||||||||||||| |||||||| ||||||||||||    
T  1605082 ggataatacttgggtgacattgtagttggtgacattggtgacatt 1605038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 34; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Original strand, 12225 - 12270
Alignment:
Q  47 tggataatacttgggtgacattgtcgttggtgatattggtgacatt 92  Q
    |||||||||||||||||||||||| |||||||| |||| |||||||    
T  12225 tggataatacttgggtgacattgtagttggtgacattgatgacatt 12270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0110 (Bit Score: 28; Significance: 0.0000006; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 48 - 102
Target Start/End: Complemental strand, 26667 - 26613
Alignment:
Q  48 ggataatacttgggtgacattgtcgttggtgatattggtgaca-ttaccaaccaca 102  Q
    |||||| |||||| ||||||||| |||||||||||| |||||| ||||||||||||    
T  26667 ggataacacttggatgacattgtggttggtgatatt-gtgacatttaccaaccaca 26613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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