View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5840-23 (Length: 130)
Name: Solexa-NF5840-23
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5840-23 |
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Alignment Details
Target: chr4 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 6 - 125
Target Start/End: Original strand, 54442381 - 54442500
Alignment:
| Q |
6 |
caaagaacaggtaatcctgtgaagaattaagttcaatcaatcatcaatcaataaatacgtatataaacttattttgagtaagcttattctgagtggttaa |
105 |
Q |
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| T |
54442381 |
caaagaacaggtaatcctgtgaagaattaagttcaatcaatcatcaatcaataaatacgtatataaacttattttgactaagcttattctgagtggttaa |
54442480 |
T |
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| Q |
106 |
tcaattaacaagcaagccat |
125 |
Q |
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| T |
54442481 |
tcaattaacaagcaagccat |
54442500 |
T |
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