View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5840-25 (Length: 128)
Name: Solexa-NF5840-25
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5840-25 |
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| [»] chr8 (2 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 2e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 35877717 - 35877844
Alignment:
| Q |
1 |
gacactgtcattctttttacgttctccatatcctgattttgtatcttgtcacataattggccataataaggatcttgtagcaaagctgcaaaaacacttc |
100 |
Q |
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| T |
35877717 |
gacactgtcattctttttacgttctccatatcctgattttgtatcttgtcccataattggccataataaggatcttgcagcaaagctgcaaaaacactcc |
35877816 |
T |
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| Q |
101 |
cccacccacccaagcacccgctccaaca |
128 |
Q |
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| T |
35877817 |
cccacccacccaagcacccgctccaaca |
35877844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 2e-41
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 35867506 - 35867618
Alignment:
| Q |
1 |
gacactgtcattcttttt--acgttctccatatcctgattttgtatcttgtcacataattggccataataaggatcttgtagcaaagctgcaaaaacact |
98 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||| |
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| T |
35867506 |
gacactgtcattctttttgtacgttctccatatcctgattttgtatcttctcacataattggccataacaaggatcttgcagcaaagctgcaaaaacact |
35867605 |
T |
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| Q |
99 |
tccccacccaccc |
111 |
Q |
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| T |
35867606 |
cccccacccaccc |
35867618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 24451918 - 24452045
Alignment:
| Q |
1 |
gacactgtcattctttttacgttctccatatcctgattttgtatcttgtcacataattggccataataaggatcttgtagcaaagctgcaaaaacacttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| | |
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| T |
24451918 |
gacactgtcattctttttacgttctccatatcctgattttgtatcttgtcccataattggccataataaggatcttgcagcaaagctgcaaaaacactcc |
24452017 |
T |
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| Q |
101 |
cccacccacccaagcacccgctccaaca |
128 |
Q |
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| T |
24452018 |
cccacccacccaagcacccgctccaaca |
24452045 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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