View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5840-29 (Length: 122)
Name: Solexa-NF5840-29
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5840-29 |
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| [»] chr8 (3 HSPs) |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 116; Significance: 2e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 35877968 - 35877849
Alignment:
| Q |
3 |
caacaacatcaacatgctccaagaaaacaatctgttatgttacaccaacctagcaccaaattggttaatgacgatctttgagaccttcgtggtaatgcta |
102 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35877968 |
caaccacatcaacatgctccaagaaaacaatctgttatgttacaccaacctagcaccaaattggttaatgacgatctttgagaccttcgtggtaatgcta |
35877869 |
T |
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| Q |
103 |
atggcaatcctttgaggatc |
122 |
Q |
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| T |
35877868 |
atggcaatcctttgaggatc |
35877849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 35870416 - 35870356
Alignment:
| Q |
9 |
catcaacatgctccaagaaaacaatctgttatgttacaccaacctagcaccaaattggtta |
69 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |
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| T |
35870416 |
catcaacatgctccaagaaaacaatctgttctgttacaacaaccaagcaccaaattggtta |
35870356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 121
Target Start/End: Complemental strand, 35867671 - 35867633
Alignment:
| Q |
83 |
agaccttcgtggtaatgctaatggcaatcctttgaggat |
121 |
Q |
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| T |
35867671 |
agaccttcttggtaatactaatggcaatcctttgaggat |
35867633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 116; Significance: 2e-59; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 3 - 122
Target Start/End: Complemental strand, 24452169 - 24452050
Alignment:
| Q |
3 |
caacaacatcaacatgctccaagaaaacaatctgttatgttacaccaacctagcaccaaattggttaatgacgatctttgagaccttcgtggtaatgcta |
102 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24452169 |
caaccacatcaacatgctccaagaaaacaatctgttatgttacaccaacctagcaccaaattggttaatgacgatctttgagaccttcgtggtaatgcta |
24452070 |
T |
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| Q |
103 |
atggcaatcctttgaggatc |
122 |
Q |
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| T |
24452069 |
atggcaatcctttgaggatc |
24452050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 24444617 - 24444557
Alignment:
| Q |
9 |
catcaacatgctccaagaaaacaatctgttatgttacaccaacctagcaccaaattggtta |
69 |
Q |
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|||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||||| |
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| T |
24444617 |
catcaacatgctccaagaaaacaatctgttctgttacaacaaccaagcaccaaattggtta |
24444557 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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