View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5840-4 (Length: 246)
Name: Solexa-NF5840-4
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5840-4 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 10 - 238
Target Start/End: Complemental strand, 6111890 - 6111657
Alignment:
| Q |
10 |
agtatcaaattaatatgcaagttttactaatatcaaactgttccctgtttgtatttatttttatgggatcgacggctgctcactccctttaaaatccaat |
109 |
Q |
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| T |
6111890 |
agtaacaaattaatatgcaagttttacgaatatcaaactgttcactgtttgtatttatttttatgggatcgacggctgctcactccctttaaaatccaat |
6111791 |
T |
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| Q |
110 |
tgttgagagcctcaatgctacatctttgtgtttctgatatatcattcttcacttcacaaatttagagataaaaagagtttgttgctgctgtttttgg-at |
208 |
Q |
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| T |
6111790 |
tgttgagagcctcaatgctacatctttgtgtttctgatatatcattcatcacttcacaaatttagagataaaaagagtttgttgctgctgtttttggaaa |
6111691 |
T |
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| Q |
209 |
aggcc----ttctttttggtacatttttcttctc |
238 |
Q |
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| T |
6111690 |
aggccttttttttttttggtacatttttcttctc |
6111657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 6186221 - 6186113
Alignment:
| Q |
22 |
atatgcaagttttactaatatcaaactgttccctgtttgtatttatttttatgggatcgacggctgctcactccctttaaaatccaattgttgagagcct |
121 |
Q |
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| T |
6186221 |
atatgcaagttctacgaatatcaaactgtt-----tatttatttatttttatggggtccacggctgctcattccctataaaatccaattgttgagagcct |
6186127 |
T |
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| Q |
122 |
caatgctacatcttt |
136 |
Q |
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| T |
6186126 |
c-atgcttcatcttt |
6186113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 22 - 136
Target Start/End: Complemental strand, 6192737 - 6192629
Alignment:
| Q |
22 |
atatgcaagttttactaatatcaaactgttccctgtttgtatttatttttatgggatcgacggctgctcactccctttaaaatccaattgttgagagcct |
121 |
Q |
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| T |
6192737 |
atatgcaagttctacgaatatcaaactgtt-----tatttatttatttttatggggtccacggctgctcattccctataaaatccaattgttgagagcct |
6192643 |
T |
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| Q |
122 |
caatgctacatcttt |
136 |
Q |
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| T |
6192642 |
c-atgcttcatcttt |
6192629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 154
Target Start/End: Complemental strand, 6251986 - 6251912
Alignment:
| Q |
81 |
acggctgctcactccctttaaaatccaattgttgagagcctc-aatgctacatctttgtgtttctgatatatcat |
154 |
Q |
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| T |
6251986 |
acggctgctcactccctttaaaatccaatcgttgagagcctctcatacttcatctttgtatttttgatatatcat |
6251912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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