View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5840-5 (Length: 197)
Name: Solexa-NF5840-5
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5840-5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 8e-97; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 8e-97
Query Start/End: Original strand, 8 - 197
Target Start/End: Original strand, 4184193 - 4184383
Alignment:
| Q |
8 |
gatagaccaataattaacccgtcaaaatcatgaaggagaaatcatgtcccctctctaataattgtcaccctgagcttttttgttaaattggttccacttt |
107 |
Q |
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| T |
4184193 |
gatagaccaataattaacccgtcaaaatcatgaaggagaaatcatgtcccctctctaataattgtcaccctgagcttttttgttaaattggttccacttt |
4184292 |
T |
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| Q |
108 |
ctgtttctagtactaattggtttgtttgtgaactttttccttaatttgaggaata-gtgggcaaacccacattgatgtatagtgtgtctgt |
197 |
Q |
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| T |
4184293 |
ctgtttctagtactaattggtttgtttgtgaactttttccttaatttgaggaataggtgggcaaacccacattgatgtatagtgtgactgt |
4184383 |
T |
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