View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5840-8 (Length: 174)
Name: Solexa-NF5840-8
Description: NF5840
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5840-8 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 3e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 3e-71
Query Start/End: Original strand, 6 - 174
Target Start/End: Complemental strand, 30474583 - 30474416
Alignment:
| Q |
6 |
catactttaagcaatgtgacaaacaagaagtgaattcgtagaaaagtacagtttagtcttgtctgcataatccgatgaaacnnnnnnncaaggagcaaaa |
105 |
Q |
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| T |
30474583 |
catactttaagcaatgtgacaaacaagaagtgaattcgtagaaaagtacagtttagtcttgtctgcataatccgatgaaacaaaaaaacaaggagcaaaa |
30474484 |
T |
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| Q |
106 |
caagccaacaggtaactagattctcactattctgatcacacacacaacaccatagatgttattcattca |
174 |
Q |
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|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30474483 |
caagacaacaggtaactagatt-tcactattctgatcacacacacaacaccatagatgttattcattca |
30474416 |
T |
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