View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5841-1 (Length: 306)

Name: Solexa-NF5841-1
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5841-1
Solexa-NF5841-1
[»] chr1 (1 HSPs)
chr1 (8-302)||(7432952-7433246)


Alignment Details
Target: chr1 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 8 - 302
Target Start/End: Original strand, 7432952 - 7433246
Alignment:
Q  8 gatagttggcctctcagccgataacttgtcatcatgtctcaaccaaggtagcacatatactttacgtacccaacgtcttttcttaccttttccctttctt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7432952 gatagttggcctctcagccgataacttgtcatcatgtctcaaccaaggtagcacatatactttacgtacccaacgtcttttcttaccttttccctttctt 7433051  T
Q  108 tcttcaatacaaagaaaattacaaaatatatgtgaagctttttaatttgattaattgcactccctctattttaactcgacttttattgataaagaattct 207  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7433052 tcttcaatacaaagaaaatgacaaaatatatgtgaagctttttaatttgattaattgcactccctctattttaactcgacttttattgataaagaattct 7433151  T
Q  208 ctttttcatatgaacataatatctatgcacataggagatatattagattgatatggacaaccctttgaactttatgtagaagtcaacaacatctg 302  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| || ||||||| |||||| |||||||| ||||    
T  7433152 ctttttcatatgaacataatatctatgcacataggagatatattagattgatatggattacccgttcaactttacgtagaaatcaacaacctctg 7433246  T

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