View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5841-13 (Length: 138)

Name: Solexa-NF5841-13
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5841-13
Solexa-NF5841-13
[»] chr4 (4 HSPs)
chr4 (3-138)||(45892584-45892715)
chr4 (3-138)||(12583136-12583267)
chr4 (42-137)||(48665940-48666031)
chr4 (5-58)||(21801525-21801578)
[»] scaffold0527 (4 HSPs)
scaffold0527 (70-138)||(3287-3355)
scaffold0527 (70-138)||(11350-11418)
scaffold0527 (1-50)||(3240-3289)
scaffold0527 (1-50)||(11303-11352)
[»] scaffold0219 (1 HSPs)
scaffold0219 (3-99)||(5833-5925)
[»] chr7 (3 HSPs)
chr7 (1-138)||(26470362-26470494)
chr7 (1-138)||(26546802-26546934)
chr7 (1-79)||(23773588-23773666)
[»] chr2 (1 HSPs)
chr2 (1-58)||(36658592-36658649)
[»] chr6 (1 HSPs)
chr6 (81-138)||(23661409-23661466)


Alignment Details
Target: chr4 (Bit Score: 67; Significance: 4e-30; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 4e-30
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 45892584 - 45892715
Alignment:
Q  3 atcaagggatgaacacacgacataaatctaccattgtccaccaacgatggaagaagtatccacggcagatacaatatatattttaggtatgatgaactag 102  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| |||||| | ||||| | ||||||    |||||||||||||||||||| |     
T  45892584 atcaagggatgaacaaacgacataaatctaccattgtccaccaacgatgcaagaagcaaccacgacggataca----atattttaggtatgatgaacgac 45892679  T
Q  103 taccacagtcatcacgaagcatctatgcacctagcc 138  Q
    ||| || |||| |||| |||||||| ||||||||||    
T  45892680 tactaccgtcaacacggagcatctaggcacctagcc 45892715  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 3 - 138
Target Start/End: Original strand, 12583136 - 12583267
Alignment:
Q  3 atcaagggatgaacacacgacataaatctaccattgtccaccaacgatggaagaagtatccacggcagatacaatatatattttaggtatgatgaactag 102  Q
    ||||| ||||||||| |||||||||||||| |||||||||||||| ||| |||||| | ||||||  ||||    | || ||||||||||||||||  |     
T  12583136 atcaatggatgaacaaacgacataaatctatcattgtccaccaacaatgcaagaagcaaccacggtggata----aaatcttttaggtatgatgaatgac 12583231  T
Q  103 taccacagtcatcacgaagcatctatgcacctagcc 138  Q
    ||| || |||| |||| ||||||||  |||||||||    
T  12583232 tactaccgtcaacacggagcatctacacacctagcc 12583267  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 137
Target Start/End: Complemental strand, 48666031 - 48665940
Alignment:
Q  42 accaacgatggaagaagtatccacggcagatacaatatatattttaggtatgatgaactagtaccacagtcatcacgaagcatctatgcacctagc 137  Q
    |||||||||| |||||| | ||||||  ||||||||||    |||||||||||||||| | ||| || |||| |||| |||||||| |||||||||    
T  48666031 accaacgatgcaagaagcaaccacggtggatacaatat----tttaggtatgatgaacgactactaccgtcaacacggagcatctacgcacctagc 48665940  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 5 - 58
Target Start/End: Complemental strand, 21801578 - 21801525
Alignment:
Q  5 caagggatgaacacacgacataaatctaccattgtccaccaacgatggaagaag 58  Q
    ||||| ||||||| |||||||||||||| || | ||||||||||||| ||||||    
T  21801578 caaggaatgaacaaacgacataaatctatcaatatccaccaacgatgcaagaag 21801525  T

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Target: scaffold0527 (Bit Score: 61; Significance: 1e-26; HSPs: 4)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 3287 - 3355
Alignment:
Q  70 gatacaatatatattttaggtatgatgaactagtaccacagtcatcacgaagcatctatgcacctagcc 138  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  3287 gatacaatatatattttaggtatgatgaactagtactacagtcatcacggagcatctatgcacctagcc 3355  T

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Target: scaffold0527; HSP #2
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 11350 - 11418
Alignment:
Q  70 gatacaatatatattttaggtatgatgaactagtaccacagtcatcacgaagcatctatgcacctagcc 138  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||    
T  11350 gatacaatatatattttaggtatgatgaactagtactacagtcatcacggagcatctatgcacctagcc 11418  T

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Target: scaffold0527; HSP #3
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 3240 - 3289
Alignment:
Q  1 agatcaagggatgaacacacgacataaatctaccattgtccaccaacgat 50  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  3240 agatcaagggatgaacaaacgacataaatctaccattgtccaccaacgat 3289  T

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Target: scaffold0527; HSP #4
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 11303 - 11352
Alignment:
Q  1 agatcaagggatgaacacacgacataaatctaccattgtccaccaacgat 50  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  11303 agatcaagggatgaacaaacgacataaatctaccattgtccaccaacgat 11352  T

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Target: scaffold0219 (Bit Score: 52; Significance: 3e-21; HSPs: 1)
Name: scaffold0219
Description:

Target: scaffold0219; HSP #1
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 3 - 99
Target Start/End: Original strand, 5833 - 5925
Alignment:
Q  3 atcaagggatgaacacacgacataaatctaccattgtccaccaacgatggaagaagtatccacggcagatacaatatatattttaggtatgatgaac 99  Q
    ||||||||||||||| ||||||||||||||||| |||||||||| |||| |||||| | ||||| ||||||||    ||||||||||||||||||||    
T  5833 atcaagggatgaacaaacgacataaatctaccactgtccaccaatgatgcaagaagcaaccacgacagataca----atattttaggtatgatgaac 5925  T

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Target: chr7 (Bit Score: 49; Significance: 2e-19; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 26470494 - 26470362
Alignment:
Q  1 agatcaagggatgaacacacgacataaatctaccattgtccaccaacgatggaagaagtatccacggcagatacaatatatattttaggtatgatgaact 100  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| | ||||| | ||||    | |||||||| |||||||||||     
T  26470494 agatcaagggatgaacaaacgacataaatctaccactgtccaccaacgatgcaagaagcaaccacgtcggata----aaatattttacgtatgatgaacg 26470399  T
Q  101 agtaccacagtcatcacgaagcatctatgcacctagcc 138  Q
    | ||| || |||| || | |||||||| ||||||||||    
T  26470398 a-tacaaccgtcaacatggagcatctacgcacctagcc 26470362  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 26546934 - 26546802
Alignment:
Q  1 agatcaagggatgaacacacgacataaatctaccattgtccaccaacgatggaagaagtatccacggcagatacaatatatattttaggtatgatgaact 100  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| | ||||| | ||||    | |||||||| |||||||||||     
T  26546934 agatcaagggatgaacaaacgacataaatctaccactgtccaccaacgatgcaagaagcaaccacgtcggata----aaatattttacgtatgatgaacg 26546839  T
Q  101 agtaccacagtcatcacgaagcatctatgcacctagcc 138  Q
    | ||| || |||| || | |||||||| ||||||||||    
T  26546838 a-tacaaccgtcaacatggagcatctacgcacctagcc 26546802  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 23773666 - 23773588
Alignment:
Q  1 agatcaagggatgaacacacgacataaatctaccattgtccaccaacgatggaagaagtatccacggcagatacaatat 79  Q
    ||||||||||||||||| ||||||| ||||||||| |||||||||| |||| |||||| | ||||| | |||| |||||    
T  23773666 agatcaagggatgaacaaacgacattaatctaccactgtccaccaatgatgcaagaagcaaccacgacggataaaatat 23773588  T

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Target: chr2 (Bit Score: 42; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 36658649 - 36658592
Alignment:
Q  1 agatcaagggatgaacacacgacataaatctaccattgtccaccaacgatggaagaag 58  Q
    ||||||||||| ||||| |||||||||||||||||||||||| |||||||| ||||||    
T  36658649 agatcaagggaagaacaaacgacataaatctaccattgtccatcaacgatgcaagaag 36658592  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 138
Target Start/End: Complemental strand, 23661466 - 23661409
Alignment:
Q  81 tattttaggtatgatgaactagtaccacagtcatcacgaagcatctatgcacctagcc 138  Q
    ||||||||||||||||||| | ||| || |||| |||| |||||||| ||||||||||    
T  23661466 tattttaggtatgatgaacgactactaccgtcaacacggagcatctacgcacctagcc 23661409  T

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