View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5841-16 (Length: 128)

Name: Solexa-NF5841-16
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5841-16
Solexa-NF5841-16
[»] chr8 (6 HSPs)
chr8 (1-128)||(12194855-12194982)
chr8 (1-128)||(12439283-12439410)
chr8 (1-128)||(12199861-12199988)
chr8 (1-128)||(12444289-12444416)
chr8 (1-67)||(15348477-15348543)
chr8 (49-77)||(41311566-41311594)
[»] chr4 (28 HSPs)
chr4 (1-91)||(7770995-7771085)
chr4 (1-110)||(7904604-7904713)
chr4 (2-78)||(7789693-7789769)
chr4 (1-91)||(7238117-7238207)
chr4 (1-102)||(7877300-7877401)
chr4 (1-91)||(45372454-45372544)
chr4 (1-91)||(48862832-48862922)
chr4 (1-84)||(7765219-7765302)
chr4 (1-80)||(48170986-48171065)
chr4 (1-72)||(49044626-49044697)
chr4 (2-80)||(48735713-48735791)
chr4 (2-91)||(48156825-48156914)
chr4 (1-101)||(45366618-45366718)
chr4 (1-68)||(7813094-7813161)
chr4 (1-68)||(7822583-7822650)
chr4 (1-68)||(49041535-49041602)
chr4 (1-75)||(7907932-7908006)
chr4 (2-80)||(48870144-48870222)
chr4 (2-80)||(48885830-48885908)
chr4 (1-102)||(7774226-7774327)
chr4 (1-66)||(49048996-49049061)
chr4 (5-69)||(37827395-37827459)
chr4 (1-68)||(7800251-7800318)
chr4 (2-68)||(48891023-48891089)
chr4 (1-101)||(48898303-48898403)
chr4 (2-90)||(50668635-50668723)
chr4 (1-68)||(7786057-7786124)
chr4 (1-60)||(33134223-33134282)
[»] chr3 (4 HSPs)
chr3 (1-91)||(11024934-11025024)
chr3 (1-91)||(11006359-11006449)
chr3 (1-68)||(47452304-47452371)
chr3 (1-91)||(11015922-11016012)
[»] chr5 (4 HSPs)
chr5 (5-103)||(29695731-29695829)
chr5 (1-87)||(29712866-29712952)
chr5 (8-91)||(29687642-29687725)
chr5 (1-60)||(42562728-42562787)
[»] chr1 (2 HSPs)
chr1 (2-77)||(24322067-24322142)
chr1 (1-60)||(24309799-24309858)
[»] scaffold0508 (1 HSPs)
scaffold0508 (1-54)||(11890-11943)
[»] chr7 (1 HSPs)
chr7 (34-91)||(48883373-48883430)


Alignment Details
Target: chr8 (Bit Score: 128; Significance: 1e-66; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 128; E-Value: 1e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 12194982 - 12194855
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcagaaggaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12194982 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcagaaggaaga 12194883  T
Q  101 tataacgtctctttcatcttcgccatgc 128  Q
    ||||||||||||||||||||||||||||    
T  12194882 tataacgtctctttcatcttcgccatgc 12194855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 128; E-Value: 1e-66
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 12439410 - 12439283
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcagaaggaaga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12439410 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcagaaggaaga 12439311  T
Q  101 tataacgtctctttcatcttcgccatgc 128  Q
    ||||||||||||||||||||||||||||    
T  12439310 tataacgtctctttcatcttcgccatgc 12439283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 12199988 - 12199861
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcagaaggaaga 100  Q
    |||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  12199988 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcataaggaata 12199889  T
Q  101 tataacgtctctttcatcttcgccatgc 128  Q
    || |||||||||||||||||| ||||||    
T  12199888 tacaacgtctctttcatcttcaccatgc 12199861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 100; E-Value: 7e-50
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 12444416 - 12444289
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcagaaggaaga 100  Q
    |||||||||||| ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |    
T  12444416 agagataagagaaaaccatgacttacaaacacatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcataaggaata 12444317  T
Q  101 tataacgtctctttcatcttcgccatgc 128  Q
    || |||||||||||||||||| ||||||    
T  12444316 tacaacgtctctttcatcttcaccatgc 12444289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 15348543 - 15348477
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctc 67  Q
    |||||||||||| ||||| |||||||||| ||||||||||| || ||||||||||||||| ||||||    
T  15348543 agagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaacctc 15348477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 41311566 - 41311594
Alignment:
Q  49 agacttcaccggcaacctcagcaggattt 77  Q
    |||||||||||||||||||||||||||||    
T  41311566 agacttcaccggcaacctcagcaggattt 41311594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 5e-23; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 7771085 - 7770995
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattca 91  Q
    |||||||||||| ||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||| ||||| || |||| ||||    
T  7771085 agagataagagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttggattattagttca 7770995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 7904713 - 7904604
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcagaaggaaga 100  Q
    |||||||||||| |||||| |||||||||  |||||||||| || |||||||||||| ||||||| || || ||||||||| || ||||||  |||||||    
T  7904713 agagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaaccacatcaagatttgaataatcaattcacgaggaaga 7904614  T
Q  101 tataacgtct 110  Q
    || |||||||    
T  7904613 tacaacgtct 7904604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 2 - 78
Target Start/End: Complemental strand, 7789769 - 7789693
Alignment:
Q  2 gagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttg 78  Q
    ||||||| ||| ||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||| |||||    
T  7789769 gagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctcatcagaatttg 7789693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 7238117 - 7238207
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattca 91  Q
    |||||||||||| ||||| ||||||||||  ||||||||||| | |||||||||||| |||||||||| ||| ||||| ||||||| ||||    
T  7238117 agagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaacctcatcagaatttggatgattagttca 7238207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 1e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 7877401 - 7877300
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcagaaggaaga 100  Q
    |||||||||||| ||||||  |||||||||||||||||||| || ||||||||||||| ||||||  | ||||||||| || || ||||||  |||||||    
T  7877401 agagataagagaaaaccatagcttacaaatgcatttgaaacgtataagagacttcaccagcaaccaaatcaggatttggataatcaattcatgaggaaga 7877302  T
Q  101 ta 102  Q
    ||    
T  7877301 ta 7877300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 45372454 - 45372544
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattca 91  Q
    |||||||| ||| ||||| ||||||||||  |||||||||| || ||||||||||||||||||||| || || |||||||| || ||||||    
T  45372454 agagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaaccttagtagaatttgaatcatcaattca 45372544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 48862922 - 48862832
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattca 91  Q
    |||||||||||| ||||| ||||| |||| |||||||||||  | ||||||||||||||| ||||| ||||||||| | ||||| ||||||    
T  48862922 agagataagagaaaaccaagacttgcaaacgcatttgaaacgaataagagacttcaccggtaaccttagcaggattaggatgatcaattca 48862832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 7765302 - 7765219
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgat 84  Q
    |||||||| ||| |||||| ||||||||||||| ||||||  ||| |||||||||||||| ||||||| ||| | |||||||||    
T  7765302 agagataatagaaaaccataacttacaaatgcacttgaaaactaagagagacttcaccggtaacctcaacagaaattgaatgat 7765219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 48170986 - 48171065
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 80  Q
    |||||||||||  ||||| ||||||||||  |||||||||| || ||||||||||||||  ||||||||||| |||||||    
T  48170986 agagataagagcaaaccaagacttacaaacacatttgaaacgtagaagagacttcaccgataacctcagcagaatttgaa 48171065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 49044626 - 49044697
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcag 72  Q
    |||||||||||| |||||| |||||||||  || ||||||| |||||||||| |||| ||||||||||||||    
T  49044626 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaacctcagcag 49044697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 80
Target Start/End: Original strand, 48735713 - 48735791
Alignment:
Q  2 gagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 80  Q
    ||||||||||| ||||| ||||||||||  ||||||||||  | ||||||||||||||| |||||||| || |||||||    
T  48735713 gagataagagaaaaccaagacttacaaacacatttgaaacgaataagagacttcaccggtaacctcagaagaatttgaa 48735791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.0000000000007
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 48156825 - 48156914
Alignment:
Q  2 gagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattca 91  Q
    ||||||||||| ||||| |||||||||| ||| ||||||| || ||||||||||||||| ||||  |  ||||||||||| || ||||||    
T  48156825 gagataagagaaaaccaagacttacaaacgcacttgaaacgtagaagagacttcaccggtaaccataaaaggatttgaattatcaattca 48156914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 45366618 - 45366718
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcagaaggaaga 100  Q
    |||||||||||| |||||  ||||||||| ||| ||||||| || |||||||||||| || ||||| || |||||||| || || ||||||  |||||||    
T  45366618 agagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaaccttagtaggatttggatcatcaattcatgaggaaga 45366717  T
Q  101 t 101  Q
    |    
T  45366718 t 45366718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7813161 - 7813094
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctca 68  Q
    |||||||||||| |||||||| |||||||  || ||||||| || |||| ||||||||||||||||||    
T  7813161 agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctca 7813094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7822650 - 7822583
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctca 68  Q
    |||||||||||| |||||||| |||||||  || ||||||| || |||| ||||||||||||||||||    
T  7822650 agagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctca 7822583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 49041535 - 49041602
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctca 68  Q
    |||||||||||| ||||| ||||| |||| |||||||||||| | |||||||||||| ||||| ||||    
T  49041535 agagataagagaaaaccaagacttgcaaacgcatttgaaacaaataagagacttcactggcaatctca 49041602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 7908006 - 7907932
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggat 75  Q
    |||||||||||| ||||||||||||| ||   | ||||||| |  |||||||||||||||||||||||| |||||    
T  7908006 agagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaacctcagtaggat 7907932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 48870222 - 48870144
Alignment:
Q  2 gagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 80  Q
    ||||||||| | ||||| |||||||||| |||||||||||  | |||||| |||||||| | ||||||||| |||||||    
T  48870222 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaa 48870144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 35; E-Value: 0.00000000004
Query Start/End: Original strand, 2 - 80
Target Start/End: Complemental strand, 48885908 - 48885830
Alignment:
Q  2 gagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaa 80  Q
    ||||||||| | ||||| |||||||||| |||||||||||  | |||||| |||||||| | ||||||||| |||||||    
T  48885908 gagataagaaaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccggtagcctcagcagaatttgaa 48885830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 7774226 - 7774327
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcagaaggaaga 100  Q
    |||||||||||| ||||||  ||||||||  |||||||||   | ||||||||||||||||| || || || ||||||||| || ||||||  |||||||    
T  7774226 agagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccggcagccgcatcaagatttgaataatcaattcatgaggaaga 7774325  T
Q  101 ta 102  Q
    ||    
T  7774326 ta 7774327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 49048996 - 49049061
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacct 66  Q
    |||||||||||| |||||| |||||||||  || ||||||| |||||||||| ||||| |||||||    
T  49048996 agagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcaccagcaacct 49049061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.0000000007
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 37827395 - 37827459
Alignment:
Q  5 ataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcag 69  Q
    ||||||| ||||||||||||||||| |||| | |||| || |||||||||||| | |||||||||    
T  37827395 ataagagttaaccatgacttacaaacgcatgtaaaacttataagagacttcactgacaacctcag 37827459  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7800318 - 7800251
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctca 68  Q
    ||||| |||||| |||||||| |||||||  || ||||||| || |||| ||||||||||||||||||    
T  7800318 agagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacctca 7800251  T

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Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 68
Target Start/End: Complemental strand, 48891089 - 48891023
Alignment:
Q  2 gagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctca 68  Q
    |||| |||||| ||||| |||||||||| ||||||||||| || ||||||||| ||||  |||||||    
T  48891089 gagacaagagaaaaccaagacttacaaacgcatttgaaacgtataagagactttaccgataacctca 48891023  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 48898403 - 48898303
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcagaaggaaga 100  Q
    ||||||||| || ||||| ||||||||||  || ||||||| |  |||||||||||| || |  |||||||| ||||||||||  ||||||  |||||||    
T  48898403 agagataagtgagaaccaagacttacaaacacacttgaaacgtgtaagagacttcacaggtagactcagcagaatttgaatgaccaattcatgaggaaga 48898304  T
Q  101 t 101  Q
    |    
T  48898303 t 48898303  T

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Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 90
Target Start/End: Complemental strand, 50668723 - 50668635
Alignment:
Q  2 gagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattc 90  Q
    ||||| ||||| ||||| || ||||||| ||| ||||||| || |||| | ||||| |||||||||| ||  ||||||||||| |||||    
T  50668723 gagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctcaccaaaatttgaatgatcaattc 50668635  T

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Target: chr4; HSP #27
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 7786124 - 7786057
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctca 68  Q
    |||||||| ||| | ||||  |||||||| |||||||||  ||| |||||| ||||||||||||||||    
T  7786124 agagataatagaaatccatagcttacaaacgcatttgaacaatataagagatttcaccggcaacctca 7786057  T

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Target: chr4; HSP #28
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 33134223 - 33134282
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccgg 60  Q
    |||||||||||| || || | |||||||| |||||||||||  | |||||||||||||||    
T  33134223 agagataagagaaaatcaaggcttacaaacgcatttgaaacgaataagagacttcaccgg 33134282  T

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Target: chr3 (Bit Score: 51; Significance: 1e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 11024934 - 11025024
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattca 91  Q
    ||||||||||| ||||||||||||||||| ||||||||||| ||  |||||||||||||| ||||||| || |||||| ||||| ||||||    
T  11024934 agagataagagctaaccatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtatgatcaattca 11025024  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 11006359 - 11006449
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattca 91  Q
    ||||||||||| |||||||||||||||||  || ||||||| || ||| ||||||||||||||||||| || |||||| ||||| ||||||    
T  11006359 agagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaagatttgtatgatcaattca 11006449  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 47452304 - 47452371
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctca 68  Q
    |||||||||||| |||||||||||| ||||||| ||||| | || |||||||||||||||||||||||    
T  47452304 agagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacctca 47452371  T

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Target: chr3; HSP #4
Raw Score: 43; E-Value: 7e-16
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 11015922 - 11016012
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattca 91  Q
    ||||||||||| |||| |||||||||||| ||||||||||| ||  |||||||||||||| ||||||| || |||||| || || ||||||    
T  11015922 agagataagagctaacaatgacttacaaacgcatttgaaacgtatgagagacttcaccggtaacctcaacatgatttgtattatcaattca 11016012  T

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Target: chr5 (Bit Score: 47; Significance: 3e-18; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 5 - 103
Target Start/End: Complemental strand, 29695829 - 29695731
Alignment:
Q  5 ataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattcagaaggaagatat 103  Q
    ||||||||||||||| ||||||||| |||||||||||  | ||||||||| || || ||||| |  ||||||||||||||||| ||| |||||||||||    
T  29695829 ataagagataaccataacttacaaacgcatttgaaacgaataagagacttgactggtaaccttaataggatttgaatgattaactcaaaaggaagatat 29695731  T

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Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 29712866 - 29712952
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaa 87  Q
    |||||||||||| |||||| ||||||||| ||| |||||||  | ||||||||||||||| ||| | |  |||||||||||||||||    
T  29712866 agagataagagaaaaccataacttacaaacgcacttgaaacgaataagagacttcaccggtaacattaaaaggatttgaatgattaa 29712952  T

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Target: chr5; HSP #3
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 29687725 - 29687642
Alignment:
Q  8 agagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattca 91  Q
    ||||| ||||| ||||||||||  || ||||| | || |||||||||||| || ||| | || |||||||||||||| ||||||    
T  29687725 agagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactggtaactttagaaggatttgaatgatcaattca 29687642  T

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Target: chr5; HSP #4
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 42562728 - 42562787
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccgg 60  Q
    |||||| ||||| ||||| |||||||||| |||||||||||  | |||||| ||||||||    
T  42562728 agagattagagaaaaccaagacttacaaacgcatttgaaacgaataagagaattcaccgg 42562787  T

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Target: chr1 (Bit Score: 40; Significance: 0.00000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000004
Query Start/End: Original strand, 2 - 77
Target Start/End: Complemental strand, 24322142 - 24322067
Alignment:
Q  2 gagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccggcaacctcagcaggattt 77  Q
    ||||||||||| ||||| |||||||||| |||||||||||  | ||||||||||||| ||||||| || |||||||    
T  24322142 gagataagagaaaaccaagacttacaaacgcatttgaaacgaataagagacttcaccagcaaccttagaaggattt 24322067  T

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Target: chr1; HSP #2
Raw Score: 28; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 24309858 - 24309799
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagacttcaccgg 60  Q
    |||||||||||| |||||| ||||||||| | |||||||||  | ||||||||| |||||    
T  24309858 agagataagagaaaaccataacttacaaacggatttgaaacgaataagagacttaaccgg 24309799  T

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Target: scaffold0508 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 11943 - 11890
Alignment:
Q  1 agagataagagataaccatgacttacaaatgcatttgaaacataaaagagactt 54  Q
    |||||||||||| |||||||||||||||| | |||||||||  | |||||||||    
T  11943 agagataagagaaaaccatgacttacaaacggatttgaaacggataagagactt 11890  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 34 - 91
Target Start/End: Complemental strand, 48883430 - 48883373
Alignment:
Q  34 tttgaaacataaaagagacttcaccggcaacctcagcaggatttgaatgattaattca 91  Q
    |||||||| |||||||||||||||  | ||||||| ||  ||||||||||||||||||    
T  48883430 tttgaaacgtaaaagagacttcacatgtaacctcaccaaaatttgaatgattaattca 48883373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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