View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5841-4 (Length: 150)

Name: Solexa-NF5841-4
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5841-4
Solexa-NF5841-4
[»] chr1 (3 HSPs)
chr1 (2-150)||(7433276-7433424)
chr1 (85-150)||(28041116-28041181)
chr1 (80-150)||(25375817-25375887)
[»] chr8 (3 HSPs)
chr8 (21-150)||(39434720-39434849)
chr8 (23-150)||(25021741-25021868)
chr8 (80-150)||(500280-500350)
[»] chr7 (3 HSPs)
chr7 (86-150)||(22198039-22198103)
chr7 (86-150)||(22239718-22239782)
chr7 (86-150)||(28517277-28517341)
[»] chr3 (2 HSPs)
chr3 (91-150)||(49018016-49018075)
chr3 (86-150)||(13582562-13582626)
[»] chr6 (2 HSPs)
chr6 (80-150)||(17249289-17249359)
chr6 (1-106)||(12401428-12401534)
[»] chr5 (4 HSPs)
chr5 (80-146)||(15292010-15292076)
chr5 (80-149)||(32230491-32230560)
chr5 (80-150)||(37873622-37873692)
chr5 (89-150)||(25663025-25663086)
[»] chr4 (3 HSPs)
chr4 (21-150)||(55933387-55933516)
chr4 (86-150)||(34107684-34107750)
chr4 (86-150)||(53619639-53619703)
[»] chr2 (3 HSPs)
chr2 (21-116)||(7760771-7760866)
chr2 (86-150)||(28225053-28225117)
chr2 (87-150)||(23484929-23484992)


Alignment Details
Target: chr1 (Bit Score: 125; Significance: 1e-64; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 2 - 150
Target Start/End: Complemental strand, 7433424 - 7433276
Alignment:
Q  2 tgcatgtgtacgcttgattgggtttcaccacttgtgcgattatggatcaaggcttttacagtggaacatgaagtcctcaaagtcgcgtcaaacaaagtga 101  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||| ||||||||    
T  7433424 tgcatgtgtacgcttgattgggtttcaccacttgtgcgattatggatcaaggcttttacagtgggacaggaagtcttcaaagtcgcgtcaagcaaagtga 7433325  T
Q  102 ccaaatatgagaaaatgtgttcataaaatcaacgtgtttttataccatt 150  Q
     |||||||||||||||||||||||||||||||||| |||||||||||||    
T  7433324 tcaaatatgagaaaatgtgttcataaaatcaacgtatttttataccatt 7433276  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Original strand, 28041116 - 28041181
Alignment:
Q  85 cgcgtcaaacaaagtgaccaaatatgagaaaatgtgttcataaaatcaacgtgtttttataccatt 150  Q
    |||||||||||||||| ||||| |||||||| |||||||  | |||||||  ||||||||||||||    
T  28041116 cgcgtcaaacaaagtggccaaacatgagaaagtgtgttctgacaatcaacaggtttttataccatt 28041181  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 25375817 - 25375887
Alignment:
Q  80 aaagtcgcgtcaaacaaagtgaccaaatatgagaaaatgtgttcataaaatcaacgtgtttttataccatt 150  Q
    ||||| ||||||| ||||||||||||| |||| ||||  ||||| ||  |||||| |||||||||||||||    
T  25375817 aaagttgcgtcaagcaaagtgaccaaacatgacaaaacatgttcttaccatcaacatgtttttataccatt 25375887  T

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Target: chr8 (Bit Score: 38; Significance: 0.0000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 21 - 150
Target Start/End: Complemental strand, 39434849 - 39434720
Alignment:
Q  21 gggtttcaccacttgtgcgattatggatcaaggcttttacagtggaacatgaagtcctcaaagtcgcgtcaaacaaagtgaccaaatatgagaaaatgtg 120  Q
    ||||||||||||||||| | ||| || |  ||||||||||||| | ||| ||||  || ||||| ||||||| ||||||| ||||| ||||||||  |||    
T  39434849 gggtttcaccacttgtgggtttaggggtggaggcttttacagtaggacaggaagctctaaaagttgcgtcaagcaaagtggccaaacatgagaaagcgtg 39434750  T
Q  121 ttcataaaatcaacgtgtttttataccatt 150  Q
    |||  | ||||||| || ||||||||||||    
T  39434749 ttctgacaatcaacatgcttttataccatt 39434720  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 23 - 150
Target Start/End: Original strand, 25021741 - 25021868
Alignment:
Q  23 gtttcaccacttgtgcgattatggatcaaggcttttacagtggaacatgaagtcctcaaagtcgcgtcaaacaaagtgaccaaatatgagaaaatgtgtt 122  Q
    ||||||||||||||| ||||| || || | | |||||||||   ||||  || ||| ||||| | ||||| |||||||   |||||||||||| ||||||    
T  25021741 gtttcaccacttgtgggattaggggtcgatgtttttacagtatgacatacagccctaaaagttgtgtcaagcaaagtggtgaaatatgagaaagtgtgtt 25021840  T
Q  123 cataaaatcaacgtgtttttataccatt 150  Q
    |  | ||||||| |||||||||||||||    
T  25021841 ctcacaatcaacatgtttttataccatt 25021868  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 150
Target Start/End: Complemental strand, 500350 - 500280
Alignment:
Q  80 aaagtcgcgtcaaacaaagtgaccaaatatgagaaaatgtgttcataaaatcaacgtgtttttataccatt 150  Q
    ||||| ||||||| ||||||| ||||| ||||||||| ||||||  | ||||||| || ||||||||||||    
T  500350 aaagttgcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgcttttataccatt 500280  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 22198103 - 22198039
Alignment:
Q  86 gcgtcaaacaaagtgaccaaatatgagaaaatgtgttcataaaatcaacgtgtttttataccatt 150  Q
    ||||||| ||||||||||||| |||||||| |||||||  | ||||||| |||||||||||||||    
T  22198103 gcgtcaagcaaagtgaccaaacatgagaaagtgtgttccaacaatcaacatgtttttataccatt 22198039  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 22239718 - 22239782
Alignment:
Q  86 gcgtcaaacaaagtgaccaaatatgagaaaatgtgttcataaaatcaacgtgtttttataccatt 150  Q
    ||||||| ||||||||||||| |||||||| |||||||  | ||||||| |||||||||||||||    
T  22239718 gcgtcaagcaaagtgaccaaacatgagaaagtgtgttccaacaatcaacatgtttttataccatt 22239782  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 28517277 - 28517341
Alignment:
Q  86 gcgtcaaacaaagtgaccaaatatgagaaaatgtgttcataaaatcaacgtgtttttataccatt 150  Q
    ||||||| ||||||| ||||| ||||||||  ||||| | | ||||||| |||||||||||||||    
T  28517277 gcgtcaagcaaagtggccaaacatgagaaagcgtgtttagacaatcaacatgtttttataccatt 28517341  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 150
Target Start/End: Complemental strand, 49018075 - 49018016
Alignment:
Q  91 aaacaaagtgaccaaatatgagaaaatgtgttcataaaatcaacgtgtttttataccatt 150  Q
    |||||||||||||||| |||||||| |||||||  | ||||||| |||||||||||||||    
T  49018075 aaacaaagtgaccaaacatgagaaagtgtgttctaacaatcaacatgtttttataccatt 49018016  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.0000000008
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 13582626 - 13582562
Alignment:
Q  86 gcgtcaaacaaagtgaccaaatatgagaaaatgtgttcataaaatcaacgtgtttttataccatt 150  Q
    ||||||| |||||||| |||| || ||||| |||||||  | |||||||||||||||||||||||    
T  13582626 gcgtcaatcaaagtgatcaaacataagaaagtgtgttctgacaatcaacgtgtttttataccatt 13582562  T

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Target: chr6 (Bit Score: 35; Significance: 0.00000000005; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 17249289 - 17249359
Alignment:
Q  80 aaagtcgcgtcaaacaaagtgaccaaatatgagaaaatgtgttcataaaatcaacgtgtttttataccatt 150  Q
    ||||| ||||||||||||||| ||||| |||||||| |||||||  | ||||||| || ||||||||||||    
T  17249289 aaagttgcgtcaaacaaagtggccaaacatgagaaagtgtgttctgacaatcaacatgcttttataccatt 17249359  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 106
Target Start/End: Complemental strand, 12401534 - 12401428
Alignment:
Q  1 atgcatgtgtacgcttgattggg-tttcaccacttgtgcgattatggatcaaggcttttacagtggaacatgaagtcctcaaagtcgcgtcaaacaaagt 99  Q
    |||||||||||  |||||||||| ||||||||||| || |||||||| ||| ||||||||  || | ||| | ||  || ||||| ||||||||||||||    
T  12401534 atgcatgtgtagacttgattggggtttcaccacttatgggattatggttcagggcttttatggtaggacaagcagcactaaaagttgcgtcaaacaaagt 12401435  T
Q  100 gaccaaa 106  Q
    | |||||    
T  12401434 ggccaaa 12401428  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 80 - 146
Target Start/End: Original strand, 15292010 - 15292076
Alignment:
Q  80 aaagtcgcgtcaaacaaagtgaccaaatatgagaaaatgtgttcataaaatcaacgtgtttttatac 146  Q
    ||||| ||||||||||||||| ||||| ||||||||| ||||||  | ||||||| |||||||||||    
T  15292010 aaagtggcgtcaaacaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgtttttatac 15292076  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 149
Target Start/End: Original strand, 32230491 - 32230560
Alignment:
Q  80 aaagtcgcgtcaaacaaagtgaccaaatatgagaaaatgtgttcataaaatcaacgtgtttttataccat 149  Q
    ||||| ||||||| ||||||||||||| ||||||||||||||||  | |||||||  | |||||||||||    
T  32230491 aaagttgcgtcaagcaaagtgaccaaacatgagaaaatgtgttctgacaatcaacaagcttttataccat 32230560  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 37873622 - 37873692
Alignment:
Q  80 aaagtcgcgtcaaacaaagtgaccaaatatgagaaaatgtgttcataaaatcaacgtgtttttataccatt 150  Q
    ||||| ||||||| ||||||| ||||| ||||||||  ||||||  | ||||||| |||||||||||||||    
T  37873622 aaagttgcgtcaagcaaagtggccaaacatgagaaagcgtgttctgacaatcaacatgtttttataccatt 37873692  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000005
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 25663025 - 25663086
Alignment:
Q  89 tcaaacaaagtgaccaaatatgagaaaatgtgttcataaaatcaacgtgtttttataccatt 150  Q
    |||||||||||| ||||| ||||||||  ||||||  | ||||||| |||||||||||||||    
T  25663025 tcaaacaaagtggccaaacatgagaaagcgtgttctgataatcaacatgtttttataccatt 25663086  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000002
Query Start/End: Original strand, 21 - 150
Target Start/End: Original strand, 55933387 - 55933516
Alignment:
Q  21 gggtttcaccacttgtgcgattatggatcaaggcttttacagtggaacatgaagtcctcaaagtcgcgtcaaacaaagtgaccaaatatgagaaaatgtg 120  Q
    |||||||||| |||||| | ||| || ||| ||||||||| || | |||   || ||| ||||| ||||||||||||||| ||||| |||||||| | ||    
T  55933387 gggtttcaccccttgtgggtttaagggtcagggcttttacggtaggacagtcagccctaaaagttgcgtcaaacaaagtggccaaacatgagaaagtttg 55933486  T
Q  121 ttcataaaatcaacgtgtttttataccatt 150  Q
    |||  | ||||||| || ||||||||||||    
T  55933487 ttctaacaatcaacatgcttttataccatt 55933516  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 34107684 - 34107750
Alignment:
Q  86 gcgtcaaacaaagtgaccaaatatgagaaaa--tgtgttcataaaatcaacgtgtttttataccatt 150  Q
    ||||||||| ||||| ||||| |||||||||  |||||||| | ||||||| |||||||||||||||    
T  34107684 gcgtcaaacgaagtggccaaacatgagaaaacgtgtgttcagataatcaacatgtttttataccatt 34107750  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 53619703 - 53619639
Alignment:
Q  86 gcgtcaaacaaagtgaccaaatatgagaaaatgtgttcataaaatcaacgtgtttttataccatt 150  Q
    ||||||| ||||||| ||||| ||||||||| ||||||  | ||||||| || ||||||||||||    
T  53619703 gcgtcaagcaaagtggccaaacatgagaaaacgtgttctgacaatcaacatgcttttataccatt 53619639  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 7760771 - 7760866
Alignment:
Q  21 gggtttcaccacttgtgcgattatggatcaaggcttttacagtggaacatgaagtcctcaaagtcgcgtcaaacaaagtgaccaaatatgagaaaa 116  Q
    ||||||||||||||||| ||||||| | |||| ||||||  |||| ||| | |  |||||||||||||||||  |||||| ||||  |||||||||    
T  7760771 gggtttcaccacttgtgggattatgaaccaagacttttatggtgggacaagcaaccctcaaagtcgcgtcaagtaaagtggccaatcatgagaaaa 7760866  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 28225117 - 28225053
Alignment:
Q  86 gcgtcaaacaaagtgaccaaatatgagaaaatgtgttcataaaatcaacgtgtttttataccatt 150  Q
    ||||||| ||||||||||||||||||||||  || |||  | ||||||| || ||||||||||||    
T  28225117 gcgtcaagcaaagtgaccaaatatgagaaagcgtattctgacaatcaacatgcttttataccatt 28225053  T

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Target: chr2; HSP #3
Raw Score: 28; E-Value: 0.0000008
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 23484929 - 23484992
Alignment:
Q  87 cgtcaaacaaagtgaccaaatatgagaaaatgtgttcataaaatcaacgtgtttttataccatt 150  Q
    |||||||||||||| ||||||||||||||   |||||  | ||||||| || ||||||||||||    
T  23484929 cgtcaaacaaagtggccaaatatgagaaagcatgttctgacaatcaacatgcttttataccatt 23484992  T

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