View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5841-5 (Length: 149)
Name: Solexa-NF5841-5
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5841-5 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 138; Significance: 2e-72; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 8 - 149
Target Start/End: Complemental strand, 474085 - 473944
Alignment:
| Q |
8 |
gtatactacaaatacgttgggactcataccctccaaaagggtgactcttatgccaagattcatacctgcatatataaactgtatcaataccataaccatt |
107 |
Q |
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| T |
474085 |
gtatactacaaatacgttgggactcataccctccaaaagggtgactcttatgccaagattcatacctgcatatataaactgtatcaataccataaccatt |
473986 |
T |
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| Q |
108 |
attggcatataatactccatgtctaaacatcccatctctgct |
149 |
Q |
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| T |
473985 |
attggcatataatactccatgtctaaacatcccatctttgct |
473944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 71 - 149
Target Start/End: Complemental strand, 479496 - 479418
Alignment:
| Q |
71 |
acctgcatatataaactgtatcaataccataaccattattggcatataatactccatgtctaaacatcccatctctgct |
149 |
Q |
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| T |
479496 |
acctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcccatctttgct |
479418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.000000000000003
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 466619 - 466498
Alignment:
| Q |
8 |
gtatactacaaatacgttgggactcataccctccaaaagggtgactcttatgccaagattcatacctgcatatataaactgtatcaataccataaccatt |
107 |
Q |
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| T |
466619 |
gtatactacaaatatccttggactcataccctccaaaagtgccattcttgtgccaagagtctgacctgcaaatattaactgtatcaacaacataactatt |
466520 |
T |
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| Q |
108 |
attggcatataatactccatgt |
129 |
Q |
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| T |
466519 |
attggcaggtagtactccatgt |
466498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 27493811 - 27493931
Alignment:
| Q |
9 |
tatactacaaatacgttgggactcataccctccaaaagggtgactcttatgccaagattcatacctgcatatataaactgtatcaataccataaccatta |
108 |
Q |
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| T |
27493811 |
tatactacaaataccattggactcaaaccctccaaaagtacaattcttgtaccaagagtcaagcctgaatatattaactgtatcaataacataaccatta |
27493910 |
T |
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| Q |
109 |
ttggcatataatactccatgt |
129 |
Q |
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| T |
27493911 |
ttggtaagtagtactccatgt |
27493931 |
T |
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