View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5841-7 (Length: 141)

Name: Solexa-NF5841-7
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5841-7
Solexa-NF5841-7
[»] chr7 (4 HSPs)
chr7 (2-141)||(21131515-21131654)
chr7 (2-141)||(21112555-21112694)
chr7 (2-141)||(21123949-21124088)
chr7 (2-141)||(18659677-18659816)
[»] chr4 (1 HSPs)
chr4 (2-141)||(39131082-39131221)


Alignment Details
Target: chr7 (Bit Score: 140; Significance: 1e-73; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 140; E-Value: 1e-73
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 21131515 - 21131654
Alignment:
Q  2 atgaaacataccaattttttgacaagttttttcgactgtaaacacgaatattaccgtcagaatccatgctcaaccttctttgcataaccatgccataatc 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21131515 atgaaacataccaattttttgacaagttttttcgactgtaaacacgaatattaccgtcagaatccatgctcaaccttctttgcataaccatgccataatc 21131614  T
Q  102 atatgtggaaaaagtgtaattatcagatgaaatgaacttt 141  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21131615 atatgtggaaaaagtgtaattatcagatgaaatgaacttt 21131654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 21112555 - 21112694
Alignment:
Q  2 atgaaacataccaattttttgacaagttttttcgactgtaaacacgaatattaccgtcagaatccatgctcaaccttctttgcataaccatgccataatc 101  Q
    |||||||||||||||||| | ||||||||||||| |||||||| ||||||||||| |||||||||| | | || ||||||||||||||||| ||||||||    
T  21112555 atgaaacataccaattttctaacaagttttttcggctgtaaactcgaatattaccatcagaatccaaggttaatcttctttgcataaccataccataatc 21112654  T
Q  102 atatgtggaaaaagtgtaattatcagatgaaatgaacttt 141  Q
    |||||||||||||  ||||||||||||||| |||||||||    
T  21112655 atatgtggaaaaaaagtaattatcagatgatatgaacttt 21112694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 3e-40
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 21123949 - 21124088
Alignment:
Q  2 atgaaacataccaattttttgacaagttttttcgactgtaaacacgaatattaccgtcagaatccatgctcaaccttctttgcataaccatgccataatc 101  Q
    |||||||||||||||||| ||||| |||||||||||| ||||| |||| |||||| ||| |||||||| | ||  |||||||||||||||| ||||||||    
T  21123949 atgaaacataccaattttctgacatgttttttcgactataaactcgaacattaccatcataatccatggttaattttctttgcataaccataccataatc 21124048  T
Q  102 atatgtggaaaaagtgtaattatcagatgaaatgaacttt 141  Q
    ||| |||||||||||||||||||||||||| |||||||||    
T  21124049 ataagtggaaaaagtgtaattatcagatgatatgaacttt 21124088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 80; E-Value: 7e-38
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 18659677 - 18659816
Alignment:
Q  2 atgaaacataccaattttttgacaagttttttcgactgtaaacacgaatattaccgtcagaatccatgctcaaccttctttgcataaccatgccataatc 101  Q
    ||||||||| |||||||  |||||||||||||||||||||||| |||| |||||| |||||||||||| | ||  |||||||||| ||||| ||||||||    
T  18659677 atgaaacatgccaatttgctgacaagttttttcgactgtaaactcgaacattaccatcagaatccatggttaattttctttgcatgaccataccataatc 18659776  T
Q  102 atatgtggaaaaagtgtaattatcagatgaaatgaacttt 141  Q
    ||| ||||||||| |||||||||||||||| |||||||||    
T  18659777 ataagtggaaaaaatgtaattatcagatgatatgaacttt 18659816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 1e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 1e-42
Query Start/End: Original strand, 2 - 141
Target Start/End: Complemental strand, 39131221 - 39131082
Alignment:
Q  2 atgaaacataccaattttttgacaagttttttcgactgtaaacacgaatattaccgtcagaatccatgctcaaccttctttgcataaccatgccataatc 101  Q
    |||||||||||||||||| | ||||  |||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||||| | || |||||    
T  39131221 atgaaacataccaattttctaacaaactttttcgactgtaaacacgaatattaccatcagaatccatggttaatcttctttgcataaccgtaccgtaatc 39131122  T
Q  102 atatgtggaaaaagtgtaattatcagatgaaatgaacttt 141  Q
    ||||||||||||| ||||||||||||||||||| ||||||    
T  39131121 atatgtggaaaaaatgtaattatcagatgaaataaacttt 39131082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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