View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5841-9 (Length: 140)
Name: Solexa-NF5841-9
Description: NF5841
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5841-9 |
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| [»] chr8 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 128; Significance: 1e-66; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 128; E-Value: 1e-66
Query Start/End: Original strand, 5 - 140
Target Start/End: Original strand, 473251 - 473386
Alignment:
| Q |
5 |
aagaatataaatgaaacaatttcgatgagagttgttgggaagtagtaaaatagttcaagggtagaagaacaaaagctgaagcggcagtcgaaaagtattt |
104 |
Q |
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| T |
473251 |
aagaatataaatgaaacaatttagatgagagttgttgggaattagtaaaatagttcaagggtagaagaacaaaagctgaagcggcagtcgaaaagtattt |
473350 |
T |
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| Q |
105 |
ttagaaaatggtgaaatcaaaagatgaatgagttga |
140 |
Q |
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| T |
473351 |
ttagaaaatggtgaaatcaaaagatgaatgagttga |
473386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 5 - 140
Target Start/End: Complemental strand, 41521360 - 41521239
Alignment:
| Q |
5 |
aagaatataaatgaaacaatttcgatgagagttgttgggaagtagtaaaatagttcaagggtagaagaacaaaagctgaagcggcagtcgaaaagtattt |
104 |
Q |
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| T |
41521360 |
aagaatataaatgaaacaatttagatgagacttgttgggaagtagtaaaatagttcaagggtagaagaacaaaagctg--------------aagtattt |
41521275 |
T |
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| Q |
105 |
ttagaaaatggtgaaatcaaaagatgaatgagttga |
140 |
Q |
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| T |
41521274 |
ttagaaaatggtgaaatcaaaagatgaatgagttga |
41521239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 1242712 - 1242819
Alignment:
| Q |
28 |
gatgagagttgttgggaagtagtaaaatagttcaagggtagaagaacaaaagctgaagcggcagtcgaaaagtatttttagaaaatggtgaaa-tcaaaa |
126 |
Q |
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||||||| |||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |||| |
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| T |
1242712 |
gatgagacttgttgggaagtagtaaaatgg------ggtagaagaacaaaagctgaagcggtggtcgaaaagtatttttagaaaatggtgaaattaaaaa |
1242805 |
T |
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| Q |
127 |
gatgaatgagttga |
140 |
Q |
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| T |
1242806 |
aatgaatgagttga |
1242819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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