View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5842-2 (Length: 145)
Name: Solexa-NF5842-2
Description: NF5842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5842-2 |
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| [»] scaffold0068 (1 HSPs) |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: scaffold0068 (Bit Score: 118; Significance: 1e-60; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 8 - 145
Target Start/End: Original strand, 4698 - 4835
Alignment:
| Q |
8 |
gccaatgcaaatgcaaccttattcgtatgaacaacttcatcacatgatgatgatgaatcaacaacaacagcatatgaacatgtatccatccatgaattac |
107 |
Q |
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| T |
4698 |
gccaatgcaaatgcaaccttattcgtatgaacaacttcatcacatgatgatgatgaaccaacaacaacaacatatgaacatgtatccatccatgaattac |
4797 |
T |
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| Q |
108 |
atgcaaccacagccgattcagtctcgctgtatggctga |
145 |
Q |
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| T |
4798 |
atgcaaccaccgccaattcagtttcgctgtatggctga |
4835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 118; Significance: 1e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 21709212 - 21709075
Alignment:
| Q |
8 |
gccaatgcaaatgcaaccttattcgtatgaacaacttcatcacatgatgatgatgaatcaacaacaacagcatatgaacatgtatccatccatgaattac |
107 |
Q |
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| T |
21709212 |
gccaatgcaaatgcaaccttattcgtatgaacaacttcatcacatgatgatgatgaaccaacaacaacaacatatgaacatgtatccatccatgaattac |
21709113 |
T |
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| Q |
108 |
atgcaaccacagccgattcagtctcgctgtatggctga |
145 |
Q |
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| T |
21709112 |
atgcaaccaccgccaattcagtttcgctgtatggctga |
21709075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 1e-60
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 42735538 - 42735401
Alignment:
| Q |
8 |
gccaatgcaaatgcaaccttattcgtatgaacaacttcatcacatgatgatgatgaatcaacaacaacagcatatgaacatgtatccatccatgaattac |
107 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42735538 |
gccaatgcaaatgcaaccttattcatatgaacaacttcatcacatgatgatgatgaaccaacaacagcagcatatgaacatgtatccatccatgaattac |
42735439 |
T |
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| Q |
108 |
atgcaaccacagccgattcagtctcgctgtatggctga |
145 |
Q |
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| T |
42735438 |
atgcaaccaccgccaattcagtctcgctgtatggctga |
42735401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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