View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5842-3 (Length: 145)
Name: Solexa-NF5842-3
Description: NF5842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5842-3 |
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| [»] chr5 (1 HSPs) |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 130; Significance: 1e-67; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 8 - 145
Target Start/End: Complemental strand, 6139174 - 6139037
Alignment:
| Q |
8 |
aaaactgctaggcatcccaagattattagttggaacactaaatcgatttacacggcctcctggcaataaccttgcatgttgttgaacatttatcatgttt |
107 |
Q |
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| T |
6139174 |
aaaactgctaggcatcccaagattaatagttggaacactaaatcgatttacacggcctcctggcaataaccttgcatgttgttgaacatttatcatattt |
6139075 |
T |
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| Q |
108 |
tcagcatatgcttcatccattcgttgttcatgaataag |
145 |
Q |
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| T |
6139074 |
tcagcatatgcttcatccattcgttgttcatgaataag |
6139037 |
T |
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Target: scaffold0008 (Bit Score: 32; Significance: 0.000000003; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 8138 - 8185
Alignment:
| Q |
39 |
ggaacactaaatcgatttacacggcctcctggcaataaccttgcatgt |
86 |
Q |
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| T |
8138 |
ggaacactaaatcgattgacacagcctccttgcaataaccttacatgt |
8185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 18737 - 18784
Alignment:
| Q |
39 |
ggaacactaaatcgatttacacggcctcctggcaataaccttgcatgt |
86 |
Q |
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| T |
18737 |
ggaacactaaatcgattgacacagcctccttgcaataaccttacatgt |
18784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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