View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: Solexa-NF5842-6 (Length: 131)
Name: Solexa-NF5842-6
Description: NF5842
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5842-6 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 116; Significance: 2e-59; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 116; E-Value: 2e-59
Query Start/End: Original strand, 8 - 131
Target Start/End: Complemental strand, 52340678 - 52340555
Alignment:
| Q |
8 |
caactatataccacaacatcacaattcacaaaacaatgctatattatattgtcaagaacataataatctcgaaatcatgctataattagggagcaatggc |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52340678 |
caactatataccacaacatcacaattcacaaaacaatgcaatattatattgtcaagaacataataatctcgaaatcatgctataattagggagcaatggc |
52340579 |
T |
|
| Q |
108 |
tacaccgtctatgacctcattggc |
131 |
Q |
| |
|
|||||||||| ||||||||||||| |
|
|
| T |
52340578 |
tacaccgtctgtgacctcattggc |
52340555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 7e-47; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 7e-47
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 9190481 - 9190383
Alignment:
| Q |
33 |
tcacaaaacaatgctatattatattgtcaagaacataataatctcgaaatcatgctataattagggagcaatggctacaccgtctatgacctcattggc |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9190481 |
tcacaaaacaatgctatattatattgtcaagaacataataatctcgaaatcatgctataattagggagcaatggctacaccgtctgtgacctcattggc |
9190383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 87; E-Value: 4e-42
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 9181351 - 9181253
Alignment:
| Q |
33 |
tcacaaaacaatgctatattatattgtcaagaacataataatctcgaaatcatgctataattagggagcaatggctacaccgtctatgacctcattggc |
131 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||| |
|
|
| T |
9181351 |
tcacaaaacaatgctatattatattgtcaagaacataataatctcgaaaacatgctataattagggagcaatggctacaccgtctgtgacgtcattggc |
9181253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University