View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5843-12 (Length: 129)
Name: Solexa-NF5843-12
Description: NF5843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5843-12 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 2e-53; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 2e-53
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 42931286 - 42931412
Alignment:
| Q |
1 |
cagactaacatctattcaacattgaattggatccttaatgatcaatcaataattataaaatatcattcatcaagtaaaaatcccctacaaacgaataaca |
100 |
Q |
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| T |
42931286 |
cagactaacatctattcaacattgaattggatccttaatgatcaatcaataattataacaaatcattcatcaagtaaaaatcccctacaaacgaata--a |
42931383 |
T |
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| Q |
101 |
cagtttgatgatcgatcgatcgatccaat |
129 |
Q |
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| T |
42931384 |
cagtttgatgatcgatcgatcaatccaat |
42931412 |
T |
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