View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5843-15 (Length: 120)
Name: Solexa-NF5843-15
Description: NF5843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5843-15 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 2e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 2e-47
Query Start/End: Original strand, 9 - 120
Target Start/End: Complemental strand, 52106850 - 52106739
Alignment:
| Q |
9 |
aaagtgctatgtacagtgaagattcctttcagagaaattcacgaagccgacgtctcttgcatataaggaaaagagaaacacttcaactccggattttgtg |
108 |
Q |
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| T |
52106850 |
aaagtgctatgcacagtgaagattcttttcagagaaattcacgaagccgacgtctcttgcatataaggaaaagagaaacactttaactcctgattttgtg |
52106751 |
T |
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| Q |
109 |
gaaaacaggttg |
120 |
Q |
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| T |
52106750 |
gaaaacaggttg |
52106739 |
T |
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Target: chr3 (Bit Score: 59; Significance: 2e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 33511693 - 33511599
Alignment:
| Q |
26 |
gaagattcctttcagagaaattcacgaagccgacgtctcttgcatataaggaaaagagaaacacttcaactccggattttgtggaaaacaggttg |
120 |
Q |
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| T |
33511693 |
gaagattccttcccgagaaattcacgaagccgacgtgtcttgcgtataagaaaaagagaaacgcttcaactctggaatttatggaaaacaggttg |
33511599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 5e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 5e-23
Query Start/End: Original strand, 26 - 120
Target Start/End: Complemental strand, 4891258 - 4891164
Alignment:
| Q |
26 |
gaagattcctttcagagaaattcacgaagccgacgtctcttgcatataaggaaaagagaaacacttcaactccggattttgtggaaaacaggttg |
120 |
Q |
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| T |
4891258 |
gaagattccttctcgagaaattcacgaagcctacgtgtcttgcttataagaaaaagagaaacgcttcaactccagattttatggaaaacaggttg |
4891164 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 2e-19; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 26 - 118
Target Start/End: Complemental strand, 35327360 - 35327268
Alignment:
| Q |
26 |
gaagattcctttcagagaaattcacgaagccgacgtctcttgcatataaggaaaagagaaacacttcaactccggattttgtggaaaacaggt |
118 |
Q |
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| T |
35327360 |
gaagattccttctcgagaaattcacgaaaccggcgtgtcttgcgtataaggaaaagagcaacgcttcaactctggattttatggaaaacaggt |
35327268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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