View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5843-16 (Length: 118)
Name: Solexa-NF5843-16
Description: NF5843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5843-16 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 61; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 21 - 118
Target Start/End: Complemental strand, 39088267 - 39088168
Alignment:
| Q |
21 |
atttcaaaataattatcacgttaaaatatcaagacannnnnnnnagggg--tttgatatatcaaaacatttattatttttctctattataatatctttat |
118 |
Q |
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| T |
39088267 |
atttcaaaataattatcacgttaaaatatcaagacattttttttaggggggtttgatatatcaaaacatttattatttttctctattaaaatatctttat |
39088168 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 52
Target Start/End: Original strand, 3098417 - 3098445
Alignment:
| Q |
24 |
tcaaaataattatcacgttaaaatatcaa |
52 |
Q |
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| T |
3098417 |
tcaaaataattatcacgttaaaatatcaa |
3098445 |
T |
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