View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5843-2 (Length: 180)
Name: Solexa-NF5843-2
Description: NF5843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5843-2 |
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Alignment Details
Target: chr3 (Bit Score: 129; Significance: 5e-67; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 129; E-Value: 5e-67
Query Start/End: Original strand, 7 - 179
Target Start/End: Original strand, 36671371 - 36671543
Alignment:
| Q |
7 |
acaaacatgttacccaataaccaaacctccatctcaaactatcaagcagatgaccccatgtacttagagagattaacctcattaagaagcccaaaatatg |
106 |
Q |
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| T |
36671371 |
acaaacatgttacacaagagccaaacctccatctcaaagtattatgcagatgaccccatgtacttagagagattagcctcattaagaagcccaaaatatg |
36671470 |
T |
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| Q |
107 |
taaacgcacgaaaccaaccttacaatttaacaatctcttagccacttggaggaagaacgtctttacattgatc |
179 |
Q |
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| T |
36671471 |
caaaggcacgaaaccaaccttacaatttaacaatctcttagccactgggaggaagaacttctttacattgatc |
36671543 |
T |
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