View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5843-21 (Length: 106)
Name: Solexa-NF5843-21
Description: NF5843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5843-21 |
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Alignment Details
Target: chr4 (Bit Score: 96; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 96; E-Value: 1e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 7660590 - 7660487
Alignment:
| Q |
1 |
agacacacagaagagcaccgcgcagagaacctagacgcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacacattaaa |
100 |
Q |
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| T |
7660590 |
agacacacagaagagcaccgcgtagagaacccagacgcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacacattaaa |
7660491 |
T |
|
| Q |
101 |
caaa |
104 |
Q |
| |
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|||| |
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| T |
7660490 |
caaa |
7660487 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 96; Significance: 1e-47; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 1e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 30164608 - 30164505
Alignment:
| Q |
1 |
agacacacagaagagcaccgcgcagagaacctagacgcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacacattaaa |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30164608 |
agacacacagaagagcaccgcgcagagaacccagacgcaaggataaagattcccaaaccacccgcctagcccgattatcacacggggcgtacacattaaa |
30164509 |
T |
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| Q |
101 |
caaa |
104 |
Q |
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|||| |
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| T |
30164508 |
caaa |
30164505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 104
Target Start/End: Original strand, 20471745 - 20471813
Alignment:
| Q |
36 |
cgcaaggataaagattcccacaccacccgcctagcccgattatcacacggggcgtacacattaaacaaa |
104 |
Q |
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| T |
20471745 |
cgcaaggataaggattcccacaaaacctgcctagcccgattgtcacatggagcataaacattaaacaaa |
20471813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 45567084 - 45567035
Alignment:
| Q |
33 |
agacgcaaggataaagattcccacaccacccgcctagcccgattatcaca |
82 |
Q |
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|||||||||||||| |||||||| | |||||||||||| ||||| ||||| |
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| T |
45567084 |
agacgcaaggataaggattcccataacacccgcctagctcgattgtcaca |
45567035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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