View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5843-25 (Length: 93)

Name: Solexa-NF5843-25
Description: NF5843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5843-25
Solexa-NF5843-25
[»] scaffold0062 (3 HSPs)
scaffold0062 (4-93)||(47895-47984)
scaffold0062 (4-93)||(60434-60523)
scaffold0062 (4-93)||(72553-72642)
[»] chr8 (1 HSPs)
chr8 (4-93)||(18691244-18691333)
[»] chr2 (3 HSPs)
chr2 (4-93)||(15698983-15699072)
chr2 (4-93)||(15711522-15711611)
chr2 (4-93)||(15724000-15724089)
[»] scaffold0443 (1 HSPs)
scaffold0443 (24-56)||(8901-8933)


Alignment Details
Target: scaffold0062 (Bit Score: 78; Significance: 6e-37; HSPs: 3)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 78; E-Value: 6e-37
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 47895 - 47984
Alignment:
Q  4 gacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcctgatgagttttcttcctgcata 93  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  47895 gacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcata 47984  T

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Target: scaffold0062; HSP #2
Raw Score: 78; E-Value: 6e-37
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 60434 - 60523
Alignment:
Q  4 gacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcctgatgagttttcttcctgcata 93  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  60434 gacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcata 60523  T

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Target: scaffold0062; HSP #3
Raw Score: 78; E-Value: 6e-37
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 72553 - 72642
Alignment:
Q  4 gacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcctgatgagttttcttcctgcata 93  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  72553 gacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcata 72642  T

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Target: chr8 (Bit Score: 78; Significance: 6e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 6e-37
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 18691244 - 18691333
Alignment:
Q  4 gacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcctgatgagttttcttcctgcata 93  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  18691244 gacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcata 18691333  T

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Target: chr2 (Bit Score: 78; Significance: 6e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 6e-37
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 15698983 - 15699072
Alignment:
Q  4 gacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcctgatgagttttcttcctgcata 93  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15698983 gacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcata 15699072  T

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Target: chr2; HSP #2
Raw Score: 78; E-Value: 6e-37
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 15711522 - 15711611
Alignment:
Q  4 gacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcctgatgagttttcttcctgcata 93  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15711522 gacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcata 15711611  T

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Target: chr2; HSP #3
Raw Score: 78; E-Value: 6e-37
Query Start/End: Original strand, 4 - 93
Target Start/End: Original strand, 15724000 - 15724089
Alignment:
Q  4 gacgggtgccattgccatgacataattgatggtattgatattaactatgagtacagcaattgcaatcctgatgagttttcttcctgcata 93  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  15724000 gacgagtgccattgcgatgacataattgatggtattgatattaactatgagtacagcaattgcaatccggatgagttttcttcctgcata 15724089  T

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Target: scaffold0443 (Bit Score: 33; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 8901 - 8933
Alignment:
Q  24 cataattgatggtattgatattaactatgagta 56  Q
    |||||||||||||||||||||||||||||||||    
T  8901 cataattgatggtattgatattaactatgagta 8933  T

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