View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5843-26 (Length: 80)

Name: Solexa-NF5843-26
Description: NF5843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5843-26
Solexa-NF5843-26
[»] chr2 (5 HSPs)
chr2 (8-80)||(19327973-19328045)
chr2 (8-80)||(19328129-19328201)
chr2 (18-80)||(19329754-19329816)
chr2 (36-80)||(19328316-19328360)
chr2 (37-80)||(19328474-19328517)


Alignment Details
Target: chr2 (Bit Score: 61; Significance: 7e-27; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 7e-27
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 19327973 - 19328045
Alignment:
Q  8 tgtttcacatagttcacacttgtgcgcagtggccaaacattgttttgaacgagttgaatggggcgtgttcgat 80  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  19327973 tgtttgacatagctcacacttgtgcgcagtggccaaacattgttttgaacgagttgaacggggcgtgttcgat 19328045  T

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Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 19328129 - 19328201
Alignment:
Q  8 tgtttcacatagttcacacttgtgcgcagtggccaaacattgttttgaacgagttgaatggggcgtgttcgat 80  Q
    ||||| ||| |||||||||||  |||||||||||||||||||||||||||||| ||||||| || ||||||||    
T  19328129 tgtttgacacagttcacactttggcgcagtggccaaacattgttttgaacgagctgaatggcgcatgttcgat 19328201  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000002
Query Start/End: Original strand, 18 - 80
Target Start/End: Original strand, 19329754 - 19329816
Alignment:
Q  18 agttcacacttgtgcgcagtggccaaacattgttttgaacgagttgaatggggcgtgttcgat 80  Q
    |||||||||||  |||||||||||||||||||| || |||||||||||||  || ||||||||    
T  19329754 agttcacactttggcgcagtggccaaacattgtcttaaacgagttgaatgccgcatgttcgat 19329816  T

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Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 80
Target Start/End: Original strand, 19328316 - 19328360
Alignment:
Q  36 gtggccaaacattgttttgaacgagttgaatggggcgtgttcgat 80  Q
    |||||||||||||||||||||| ||||||||||  ||||||||||    
T  19328316 gtggccaaacattgttttgaacaagttgaatggctcgtgttcgat 19328360  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 80
Target Start/End: Original strand, 19328474 - 19328517
Alignment:
Q  37 tggccaaacattgttttgaacgagttgaatggggcgtgttcgat 80  Q
    ||||||||||||||||||||| ||||||||||  ||||||||||    
T  19328474 tggccaaacattgttttgaacaagttgaatggctcgtgttcgat 19328517  T

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