View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5843-32 (Length: 54)
Name: Solexa-NF5843-32
Description: NF5843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5843-32 |
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| [»] chr2 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 47; Significance: 1e-18; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-18
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 4314888 - 4314842
Alignment:
| Q |
8 |
aatataaagcaaaaatttgatgttcaagcatgggcatgtgtttctga |
54 |
Q |
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| T |
4314888 |
aatataaagcaaaaatttgatgttcaagcatgggcatgtgtttctga |
4314842 |
T |
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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.0000000009
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 4306026 - 4305983
Alignment:
| Q |
8 |
aatataaagcaaaaatttgatgttcaagcatgggcatgtgtttc |
51 |
Q |
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| T |
4306026 |
aatataaagcaaaattttgatgtgcaagcatgggcttgtgtttc |
4305983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.00000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.00000000000006
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 41933041 - 41933087
Alignment:
| Q |
8 |
aatataaagcaaaaatttgatgttcaagcatgggcatgtgtttctga |
54 |
Q |
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| T |
41933041 |
aatataaagcaaaagtttgatgttcaagcatgggcttgtgtttctga |
41933087 |
T |
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