View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5843-34 (Length: 44)

Name: Solexa-NF5843-34
Description: NF5843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5843-34
Solexa-NF5843-34
[»] chr8 (2 HSPs)
chr8 (1-44)||(3996225-3996268)
chr8 (3-42)||(40008032-40008071)
[»] chr6 (2 HSPs)
chr6 (1-44)||(27619609-27619652)
chr6 (1-44)||(27635219-27635262)
[»] chr5 (4 HSPs)
chr5 (1-44)||(15649005-15649048)
chr5 (1-44)||(15664381-15664424)
chr5 (1-43)||(22989456-22989498)
chr5 (1-43)||(23004523-23004565)
[»] chr2 (5 HSPs)
chr2 (1-44)||(34273959-34274002)
chr2 (1-44)||(34300973-34301016)
chr2 (1-44)||(15706682-15706725)
chr2 (1-43)||(4728287-4728329)
chr2 (3-41)||(37942179-37942217)
[»] scaffold0184 (1 HSPs)
scaffold0184 (1-44)||(24676-24719)
[»] scaffold0078 (1 HSPs)
scaffold0078 (1-44)||(48125-48168)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-44)||(55594-55637)
[»] chr3 (6 HSPs)
chr3 (1-43)||(6186976-6187018)
chr3 (1-43)||(6211743-6211785)
chr3 (1-42)||(18325319-18325360)
chr3 (1-42)||(18340416-18340457)
chr3 (1-43)||(4716296-4716337)
chr3 (1-43)||(4731476-4731517)
[»] scaffold0131 (1 HSPs)
scaffold0131 (1-42)||(24290-24331)
[»] chr7 (1 HSPs)
chr7 (1-42)||(18136758-18136799)
[»] chr4 (1 HSPs)
chr4 (1-41)||(14659761-14659801)


Alignment Details
Target: chr8 (Bit Score: 40; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 3996268 - 3996225
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaatg 44  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  3996268 acagatcaagcacatggaaacaacgcatcacagccattcaaatg 3996225  T

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Target: chr8; HSP #2
Raw Score: 28; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 42
Target Start/End: Original strand, 40008032 - 40008071
Alignment:
Q  3 agatcaagcacatggaaacaacgcatcatagccattcaaa 42  Q
    ||||||||||||||| |||||||||||| | |||||||||    
T  40008032 agatcaagcacatggtaacaacgcatcacaaccattcaaa 40008071  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27619609 - 27619652
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaatg 44  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  27619609 acagatcaagcacatggaaacaacgcatcataaccattcaaatg 27619652  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 27635219 - 27635262
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaatg 44  Q
    |||||||||||||||||||||||||||||||| |||||||||||    
T  27635219 acagatcaagcacatggaaacaacgcatcataaccattcaaatg 27635262  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000001; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15649005 - 15649048
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaatg 44  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  15649005 acagatcaagcacatggaaacaacgcatcacagccattcaaatg 15649048  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15664381 - 15664424
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaatg 44  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  15664381 acagatcaagcacatggaaacaacgcatcacagccattcaaatg 15664424  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 22989456 - 22989498
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaat 43  Q
    ||||||||||||||||||||||| | |||| ||||||||||||    
T  22989456 acagatcaagcacatggaaacaaagaatcacagccattcaaat 22989498  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 23004523 - 23004565
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaat 43  Q
    ||||||||||||||||||||||| | |||| ||||||||||||    
T  23004523 acagatcaagcacatggaaacaaagaatcacagccattcaaat 23004565  T

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Target: chr2 (Bit Score: 40; Significance: 0.00000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34274002 - 34273959
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaatg 44  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  34274002 acagatcaagcacatggaaacaacgcatcacagccattcaaatg 34273959  T

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Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34301016 - 34300973
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaatg 44  Q
    |||||||||||||||||||||||||||||| |||||||||||||    
T  34301016 acagatcaagcacatggaaacaacgcatcacagccattcaaatg 34300973  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 15706682 - 15706725
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaatg 44  Q
    |||||||||||||||||||||||||||||| | |||||||||||    
T  15706682 acagatcaagcacatggaaacaacgcatcacaaccattcaaatg 15706725  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 4728287 - 4728329
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaat 43  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  4728287 acagatcaagcacatggaaacaaagcatcacagccattcaaat 4728329  T

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Target: chr2; HSP #5
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 3 - 41
Target Start/End: Original strand, 37942179 - 37942217
Alignment:
Q  3 agatcaagcacatggaaacaacgcatcatagccattcaa 41  Q
    |||||||||| |||| |||||||||||| ||||||||||    
T  37942179 agatcaagcatatggtaacaacgcatcacagccattcaa 37942217  T

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Target: scaffold0184 (Bit Score: 36; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 36; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 24676 - 24719
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaatg 44  Q
    ||||||||||||||||||| |||||||||| |||||||||||||    
T  24676 acagatcaagcacatggaaccaacgcatcacagccattcaaatg 24719  T

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Target: scaffold0078 (Bit Score: 36; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 36; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 48168 - 48125
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaatg 44  Q
    ||||||||||||||||||| |||||||||| |||||||||||||    
T  48168 acagatcaagcacatggaaccaacgcatcacagccattcaaatg 48125  T

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Target: scaffold0062 (Bit Score: 36; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 36; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 55594 - 55637
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaatg 44  Q
    |||||||||||||||||||||||||||||| | |||||||||||    
T  55594 acagatcaagcacatggaaacaacgcatcacaaccattcaaatg 55637  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 6187018 - 6186976
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaat 43  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  6187018 acagatcaagcacatggaaacaaagcatcacagccattcaaat 6186976  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 6211785 - 6211743
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaat 43  Q
    ||||||||||||||||||||||| |||||| ||||||||||||    
T  6211785 acagatcaagcacatggaaacaaagcatcacagccattcaaat 6211743  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18325360 - 18325319
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaa 42  Q
    ||||||||||||||||||||||| |||||| |||||||||||    
T  18325360 acagatcaagcacatggaaacaaagcatcacagccattcaaa 18325319  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18340457 - 18340416
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaa 42  Q
    ||||||||||||||||||||||| |||||| |||||||||||    
T  18340457 acagatcaagcacatggaaacaaagcatcacagccattcaaa 18340416  T

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Target: chr3; HSP #5
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4716337 - 4716296
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaat 43  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||    
T  4716337 acagatcaagcacatgg-aacaaagcatcacagccattcaaat 4716296  T

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Target: chr3; HSP #6
Raw Score: 27; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 4731517 - 4731476
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaat 43  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||    
T  4731517 acagatcaagcacatgg-aacaaagcatcacagccattcaaat 4731476  T

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Target: scaffold0131 (Bit Score: 34; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 34; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 24331 - 24290
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaa 42  Q
    ||||||||||||||||||||||| |||||| |||||||||||    
T  24331 acagatcaagcacatggaaacaaagcatcacagccattcaaa 24290  T

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Target: chr7 (Bit Score: 34; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 18136799 - 18136758
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaaa 42  Q
    ||||||||||||||||||||||| |||||| |||||||||||    
T  18136799 acagatcaagcacatggaaacaaagcatcacagccattcaaa 18136758  T

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Target: chr4 (Bit Score: 29; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 14659761 - 14659801
Alignment:
Q  1 acagatcaagcacatggaaacaacgcatcatagccattcaa 41  Q
    |||||||||||||||||||||||  ||||| ||||||||||    
T  14659761 acagatcaagcacatggaaacaaaacatcacagccattcaa 14659801  T

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