View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5843-35 (Length: 36)
Name: Solexa-NF5843-35
Description: NF5843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5843-35 |
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Alignment Details
Target: chr5 (Bit Score: 32; Significance: 0.0000000004; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 37704428 - 37704459
Alignment:
| Q |
4 |
acataacctgaaactaaggggcaaggaccaaa |
35 |
Q |
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| T |
37704428 |
acataacctgaaactaaggggcaaggaccaaa |
37704459 |
T |
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Target: chr5; HSP #2
Raw Score: 28; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 35
Target Start/End: Original strand, 37437494 - 37437525
Alignment:
| Q |
4 |
acataacctgaaactaaggggcaaggaccaaa |
35 |
Q |
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||||||| |||||||||||||||||||||||| |
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| T |
37437494 |
acataacttgaaactaaggggcaaggaccaaa |
37437525 |
T |
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