View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: Solexa-NF5843-5 (Length: 140)

Name: Solexa-NF5843-5
Description: NF5843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] Solexa-NF5843-5
Solexa-NF5843-5
[»] chr4 (7 HSPs)
chr4 (4-140)||(35033154-35033290)
chr4 (4-140)||(13779956-13780092)
chr4 (62-123)||(35292682-35292743)
chr4 (26-128)||(21261065-21261167)
chr4 (18-129)||(41222938-41223049)
chr4 (4-119)||(46142650-46142765)
chr4 (62-121)||(50859444-50859503)
[»] chr3 (8 HSPs)
chr3 (1-140)||(25046084-25046223)
chr3 (25-140)||(32279070-32279185)
chr3 (25-121)||(42028615-42028711)
chr3 (62-129)||(39439298-39439365)
chr3 (17-129)||(44714045-44714157)
chr3 (72-130)||(24373430-24373488)
chr3 (66-120)||(27011918-27011972)
chr3 (4-47)||(35231178-35231221)
[»] chr2 (5 HSPs)
chr2 (4-140)||(28198495-28198631)
chr2 (4-121)||(28219727-28219844)
chr2 (62-129)||(10354882-10354949)
chr2 (60-121)||(17999010-17999071)
chr2 (65-120)||(44247065-44247120)
[»] chr7 (3 HSPs)
chr7 (4-140)||(19626127-19626263)
chr7 (62-129)||(36656838-36656905)
chr7 (43-129)||(19848459-19848545)
[»] chr5 (4 HSPs)
chr5 (32-140)||(30085612-30085720)
chr5 (25-121)||(4944473-4944569)
chr5 (53-129)||(11617866-11617942)
chr5 (28-129)||(41484280-41484381)
[»] chr1 (9 HSPs)
chr1 (28-136)||(8099703-8099811)
chr1 (17-120)||(15582297-15582400)
chr1 (62-121)||(34970845-34970904)
chr1 (62-129)||(48047023-48047090)
chr1 (27-130)||(8103588-8103691)
chr1 (62-121)||(49765595-49765654)
chr1 (35-118)||(8102097-8102180)
chr1 (4-47)||(35306162-35306205)
chr1 (65-120)||(42366615-42366670)
[»] scaffold0022 (2 HSPs)
scaffold0022 (52-120)||(43492-43560)
scaffold0022 (52-120)||(77212-77280)
[»] chr8 (3 HSPs)
chr8 (62-121)||(38680516-38680575)
chr8 (64-135)||(29844956-29845027)
chr8 (81-120)||(14111671-14111710)
[»] scaffold0110 (1 HSPs)
scaffold0110 (65-119)||(37901-37955)
[»] scaffold0039 (1 HSPs)
scaffold0039 (62-129)||(57660-57727)


Alignment Details
Target: chr4 (Bit Score: 113; Significance: 1e-57; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 113; E-Value: 1e-57
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 35033154 - 35033290
Alignment:
Q  4 gaatggagcgaagtggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccac 103  Q
    |||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  35033154 gaatggagcggagtggaacggaatgggatggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaatggaactaattttccac 35033253  T
Q  104 tccattgtttggaaagtgaatggaacaaaatgattta 140  Q
    ||||||||||||||||||||||||||  |||||||||    
T  35033254 tccattgtttggaaagtgaatggaacggaatgattta 35033290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 13780092 - 13779956
Alignment:
Q  4 gaatggagcgaagtggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccac 103  Q
    |||||||||| ||||||||  ||||||||||||  |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  13780092 gaatggagcggagtggaacaaaatggaatggaatcgagcggaataaaggttccatcctattgtttggatattttactacggaatggaactaattttccac 13779993  T
Q  104 tccattgtttggaaagtgaatggaacaaaatgattta 140  Q
    ||||||||||||||||||||||||||  |||||||||    
T  13779992 tccattgtttggaaagtgaatggaacggaatgattta 13779956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 35292743 - 35292682
Alignment:
Q  62 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaa 123  Q
    |||||||||||||||||  |||||||||||||||||| ||||||||||||||||||||||||    
T  35292743 attgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaaagtgaa 35292682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 3e-18
Query Start/End: Original strand, 26 - 128
Target Start/End: Original strand, 21261065 - 21261167
Alignment:
Q  26 atggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatg 125  Q
    ||||||||||| |||| ||||||||| |||||| | ||||||| ||||||  |  ||||||||  |||||||||| |||||||||||||||||||||| |    
T  21261065 atggaatggaatggagtggaacaaagattccattccattgttttgatattatatgacggaatgagactaattttctactccattgtttggaaagtgaacg 21261164  T
Q  126 gaa 128  Q
    |||    
T  21261165 gaa 21261167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000005
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 41222938 - 41223049
Alignment:
Q  18 ggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaa 117  Q
    |||||| ||||||| ||||||||  |||| |||| |||||| | |||||||||||| || |  | |||| ||||||| ||||||| ||||||||||||||    
T  41222938 ggaacggaatggaacggaacggaatggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaa 41223037  T
Q  118 agtgaatggaac 129  Q
    ||| || |||||    
T  41223038 agttaacggaac 41223049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 4 - 119
Target Start/End: Complemental strand, 46142765 - 46142650
Alignment:
Q  4 gaatggagcgaagtggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccac 103  Q
    ||||||| || ||||||| | |||||| |||| ||||  |||| | || |||||| | |||||||||||||||||| |||||  ||||  || ||| ||     
T  46142765 gaatggaacggagtggaatgaaatggagtggagcggaatggaagagagattccattccattgtttggatatttcacgacggagcggaataaaattttcat 46142666  T
Q  104 tccattgtttggaaag 119  Q
    ||||||||||||||||    
T  46142665 tccattgtttggaaag 46142650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 50859503 - 50859444
Alignment:
Q  62 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtg 121  Q
    |||||||||||||||    |||||||| ||||||||| |||||||||| |||||||||||    
T  50859503 attgtttggatattttttgacggaatgaaactaatttcccactccattatttggaaagtg 50859444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 1e-54; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 1e-54
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 25046223 - 25046084
Alignment:
Q  1 acagaatggagcgaagtggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttc 100  Q
    ||||||||||||| ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  25046223 acagaatggagcggagtggaactgaatggaatggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaattgaactaattttc 25046124  T
Q  101 cactccattgtttggaaagtgaatggaacaaaatgattta 140  Q
    ||||||||||||| |||||||||||||||  |||||||||    
T  25046123 cactccattgtttagaaagtgaatggaacggaatgattta 25046084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 8e-50
Query Start/End: Original strand, 25 - 140
Target Start/End: Complemental strand, 32279185 - 32279070
Alignment:
Q  25 aatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaat 124  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||    
T  32279185 aatggaatggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaattgaactaattttccactccattgtttggaaagtgaat 32279086  T
Q  125 ggaacaaaatgattta 140  Q
    |||||  |||||||||    
T  32279085 ggaacggaatgattta 32279070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 25 - 121
Target Start/End: Original strand, 42028615 - 42028711
Alignment:
Q  25 aatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtg 121  Q
    |||||||||||| |||| ||||||||| || ||| | ||||||||||||||  ||  ||||||||||||||||| ||||||||||||||||||||||    
T  42028615 aatggaatggaatggagtggaacaaagatttcattccattgtttggatattatacggcggaatggaactaatttcccactccattgtttggaaagtg 42028711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 39439298 - 39439365
Alignment:
Q  62 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaac 129  Q
    |||||||||||||||||  |||||||| ||||||||| ||||||||||||||| |||||||| |||||    
T  39439298 attgtttggatatttcaagacggaatgaaactaatttcccactccattgtttgaaaagtgaacggaac 39439365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 129
Target Start/End: Complemental strand, 44714157 - 44714045
Alignment:
Q  17 tggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttgga 116  Q
    |||||| |||||||||||| ||||  |||| |||| || ||| | ||||||||||||||| || | ||||||||||||||||| || || |||||||||     
T  44714157 tggaacataatggaatggagcggaatggaataaagatttcattcaattgtttggatattttacgatggaatggaactaatttttcattctattgtttggc 44714058  T
Q  117 aagtgaatggaac 129  Q
    || |||| |||||    
T  44714057 aaatgaacggaac 44714045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000005
Query Start/End: Original strand, 72 - 130
Target Start/End: Original strand, 24373430 - 24373488
Alignment:
Q  72 tatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaaca 130  Q
    ||||| || |||||||| ||||||||| ||| |||||||||||||||||| ||||||||    
T  24373430 tattttacgacggaatgaaactaatttcccattccattgtttggaaagtggatggaaca 24373488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 27011972 - 27011918
Alignment:
Q  66 tttggatatttcactacggaatggaactaattttccactccattgtttggaaagt 120  Q
    |||||||||||||| | |||| ||| |||| ||||| ||||||||||||||||||    
T  27011972 tttggatatttcacgatggaagggagctaactttccgctccattgtttggaaagt 27011918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 35231178 - 35231221
Alignment:
Q  4 gaatggagcgaagtggaacgtaatggaatggaacggagcggaac 47  Q
    |||||||||| | |||||||||||||||||||  ||||||||||    
T  35231178 gaatggagcggaatggaacgtaatggaatggagtggagcggaac 35231221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 8e-53; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 8e-53
Query Start/End: Original strand, 4 - 140
Target Start/End: Original strand, 28198495 - 28198631
Alignment:
Q  4 gaatggagcgaagtggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccac 103  Q
    ||||| |||| ||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  28198495 gaatgaagcggagtggaacggaatggaatggaacggagcggaacaaaggttccaccctattgtttggatattttactacggaatggaactaattttccac 28198594  T
Q  104 tccattgtttggaaagtgaatggaacaaaatgattta 140  Q
    | ||||||||||||||||||||||||  |||||||||    
T  28198595 ttcattgtttggaaagtgaatggaacggaatgattta 28198631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 4e-27
Query Start/End: Original strand, 4 - 121
Target Start/End: Complemental strand, 28219844 - 28219727
Alignment:
Q  4 gaatggagcgaagtggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccac 103  Q
    |||||||||| | ||||||| |||||||||||| |||| ||||||||| || ||| | ||||||||||||||  ||  ||||||||||||||||| ||||    
T  28219844 gaatggagcggaatggaacggaatggaatggaatggagtggaacaaagatttcattccattgtttggatattatacggcggaatggaactaatttcccac 28219745  T
Q  104 tccattgtttggaaagtg 121  Q
    ||||||||||||||||||    
T  28219744 tccattgtttggaaagtg 28219727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 10354949 - 10354882
Alignment:
Q  62 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaac 129  Q
    |||||||||||||||||  |||||||||||||||||| |||||||||||||||||| ||||| |||||    
T  10354949 attgtttggatatttcaagacggaatggaactaatttcccactccattgtttggaaggtgaacggaac 10354882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.0000000000008
Query Start/End: Original strand, 60 - 121
Target Start/End: Original strand, 17999010 - 17999071
Alignment:
Q  60 ctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtg 121  Q
    ||||||||||||||||| |  |||||||||||||||||| ||| ||||||||||| ||||||    
T  17999010 ctattgtttggatattttatgacggaatggaactaatttcccattccattgtttgaaaagtg 17999071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 44247120 - 44247065
Alignment:
Q  65 gtttggatatttcactacggaatggaactaattttccactccattgtttggaaagt 120  Q
    ||||||||||||||| | |||| | |||||| ||||||||||||||||||| ||||    
T  44247120 gtttggatatttcacgatggaacgaaactaactttccactccattgtttgggaagt 44247065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 2e-50; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 2e-50
Query Start/End: Original strand, 4 - 140
Target Start/End: Complemental strand, 19626263 - 19626127
Alignment:
Q  4 gaatggagcgaagtggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccac 103  Q
    |||||||||| ||||||||  |||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  19626263 gaatggagcggagtggaacagaatggaatggaacgtagcggaataaaggttccatcctattgtttggatattttactacggaatggaactaattttccac 19626164  T
Q  104 tccattgtttggaaagtgaatggaacaaaatgattta 140  Q
    || |||||||||||||||||||||||  |||||||||    
T  19626163 tcaattgtttggaaagtgaatggaacggaatgattta 19626127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 129
Target Start/End: Original strand, 36656838 - 36656905
Alignment:
Q  62 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaac 129  Q
    |||| |||||||||| |  ||||||||||||||| ||||| ||||||||||||||  ||||| |||||    
T  36656838 attgcttggatattttatgacggaatggaactaactttccgctccattgtttggatcgtgaacggaac 36656905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 43 - 129
Target Start/End: Complemental strand, 19848545 - 19848459
Alignment:
Q  43 ggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaac 129  Q
    |||| |||| |||||| | |||||||||||| || |  | |||| ||||||| ||||||| ||||||||||||||||| || |||||    
T  19848545 ggaataaagattccattccattgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagttaacggaac 19848459  T

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Target: chr5 (Bit Score: 93; Significance: 1e-45; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 93; E-Value: 1e-45
Query Start/End: Original strand, 32 - 140
Target Start/End: Complemental strand, 30085720 - 30085612
Alignment:
Q  32 tggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaacaa 131  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||      
T  30085720 tggaacggagcggaacaaaggttccatcctattgtttggatattttactacggaattgaactaattttccactccattgtttggaaagtgaatggaacgg 30085621  T
Q  132 aatgattta 140  Q
    |||||||||    
T  30085620 aatgattta 30085612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 2e-19
Query Start/End: Original strand, 25 - 121
Target Start/End: Complemental strand, 4944569 - 4944473
Alignment:
Q  25 aatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtg 121  Q
    |||| |||||||||||| ||||||||| |||||| | ||||||||||||||  || ||| ||||||||||||||   ||||||||||||||||||||    
T  4944569 aatgaaatggaacggagtggaacaaagattccattccattgtttggatattatacgacgaaatggaactaatttcatactccattgtttggaaagtg 4944473  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 53 - 129
Target Start/End: Complemental strand, 11617942 - 11617866
Alignment:
Q  53 ttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaac 129  Q
    |||||| | |||||||| ||||||||  |||||||| ||||||||| |||||||||||||||||||||||| |||||    
T  11617942 ttccattccattgtttgaatatttcaagacggaatgaaactaatttcccactccattgtttggaaagtgaacggaac 11617866  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000004
Query Start/End: Original strand, 28 - 129
Target Start/End: Complemental strand, 41484381 - 41484280
Alignment:
Q  28 ggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatgga 127  Q
    ||||| ||| ||||||||||||   ||||||   ||||||||||||||| || | |||| ||||| |||| | || |||||||||| ||||||||| |||    
T  41484381 ggaatagaatggagcggaacaattattccatttcattgtttggatattttacgatggaacggaacaaattattcattccattgtttagaaagtgaacgga 41484282  T
Q  128 ac 129  Q
    ||    
T  41484281 ac 41484280  T

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Target: chr1 (Bit Score: 45; Significance: 5e-17; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 5e-17
Query Start/End: Original strand, 28 - 136
Target Start/End: Complemental strand, 8099811 - 8099703
Alignment:
Q  28 ggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatgga 127  Q
    |||| ||||||||| ||||||||| || ||| | ||||||||||||||  || |||||||| ||||||||| |||||||||||||| |||| |  | |||    
T  8099811 ggaacggaacggagtggaacaaagatttcattccattgtttggatattaaacaacggaatgaaactaatttcccactccattgtttagaaaatagacgga 8099712  T
Q  128 acaaaatga 136  Q
    |||||||||    
T  8099711 acaaaatga 8099703  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 15582400 - 15582297
Alignment:
Q  17 tggaacgtaatggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttgga 116  Q
    ||||||| || ||||||||| ||| ||||| |||  |||||| | |||||||||||| || |  | |||||||||||||||||||| |||||||||||||    
T  15582400 tggaacggaagggaatggaatggaacggaataaaaattccattccattgtttggatactttatgatggaatggaactaattttccattccattgtttgga 15582301  T
Q  117 aagt 120  Q
    ||||    
T  15582300 aagt 15582297  T

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Target: chr1; HSP #3
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 34970904 - 34970845
Alignment:
Q  62 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtg 121  Q
    ||||||||||||||| |  |||||||||||||||||| ||||||||||||||||||||||    
T  34970904 attgtttggatattttatgacggaatggaactaatttcccactccattgtttggaaagtg 34970845  T

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Target: chr1; HSP #4
Raw Score: 44; E-Value: 2e-16
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 48047090 - 48047023
Alignment:
Q  62 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaac 129  Q
    |||||||||| |||| |  || ||||||||||||||| ||||||||||||||||||||||||||||||    
T  48047090 attgtttggaaattttaagacagaatggaactaatttcccactccattgtttggaaagtgaatggaac 48047023  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 130
Target Start/End: Original strand, 8103588 - 8103691
Alignment:
Q  27 tggaatggaacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatgg 126  Q
    ||||||| ||||||| ||||||||| ||| ||   ||||||||||||||  || |||||||  ||||||||| |||||||||| |||  ||| || ||||    
T  8103588 tggaatgaaacggagtggaacaaagattctatttcattgtttggatattaaacaacggaataaaactaatttcccactccattatttaaaaaatggatgg 8103687  T
Q  127 aaca 130  Q
    ||||    
T  8103688 aaca 8103691  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 49765654 - 49765595
Alignment:
Q  62 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtg 121  Q
    |||||||| |||||| || | |||||| ||||||||| ||||||||||||||| ||||||    
T  49765654 attgtttgaatattttacgatggaatgaaactaatttcccactccattgtttgaaaagtg 49765595  T

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Target: chr1; HSP #7
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 35 - 118
Target Start/End: Original strand, 8102097 - 8102180
Alignment:
Q  35 aacggagcggaacaaaggttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaa 118  Q
    ||||||| ||||||||| || ||| | |||||||| |||||  || | |||||  ||||||||| |||||||||||||| ||||    
T  8102097 aacggagtggaacaaagatttcattccattgtttgaatattaaacgatggaataaaactaatttcccactccattgtttagaaa 8102180  T

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Target: chr1; HSP #8
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 4 - 47
Target Start/End: Original strand, 35306162 - 35306205
Alignment:
Q  4 gaatggagcgaagtggaacgtaatggaatggaacggagcggaac 47  Q
    |||||||||| | |||||||||||||||||||  ||||||||||    
T  35306162 gaatggagcggaatggaacgtaatggaatggagtggagcggaac 35306205  T

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Target: chr1; HSP #9
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 65 - 120
Target Start/End: Complemental strand, 42366670 - 42366615
Alignment:
Q  65 gtttggatatttcactacggaatggaactaattttccactccattgtttggaaagt 120  Q
    ||||||||||||||| | ||||  || | || ||||||||||||||||||||||||    
T  42366670 gtttggatatttcacgatggaacagagccaactttccactccattgtttggaaagt 42366615  T

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Target: scaffold0022 (Bit Score: 37; Significance: 0.000000000003; HSPs: 2)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 43492 - 43560
Alignment:
Q  52 gttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagt 120  Q
    ||||||| | ||||||||||||||| || |||||||| |||||||||  || |||||||||||||||||    
T  43492 gttccattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagt 43560  T

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Target: scaffold0022; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 77212 - 77280
Alignment:
Q  52 gttccatcctattgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagt 120  Q
    ||||||| | ||||||||||||||| || |||||||| |||||||||  || |||||||||||||||||    
T  77212 gttccattccattgtttggatattttacgacggaatgaaactaatttctcattccattgtttggaaagt 77280  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000001
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 38680575 - 38680516
Alignment:
Q  62 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtg 121  Q
    ||||||||||||||| || | ||||| |||||||||| ||||||||||| ||||||||||    
T  38680575 attgtttggatattttacgatggaattgaactaatttcccactccattgcttggaaagtg 38680516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000003
Query Start/End: Original strand, 64 - 135
Target Start/End: Complemental strand, 29845027 - 29844956
Alignment:
Q  64 tgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaacaaaatg 135  Q
    ||||||||||||| |  |||||||||||||||||| ||| |||||||||||  ||||  |||||||| ||||    
T  29845027 tgtttggatatttaatgacggaatggaactaatttcccattccattgtttgagaagtcgatggaacataatg 29844956  T

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Target: chr8; HSP #3
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 14111671 - 14111710
Alignment:
Q  81 acggaatggaactaattttccactccattgtttggaaagt 120  Q
    |||||| ||||||| ||||||| |||||||||||||||||    
T  14111671 acggaacggaactagttttccattccattgtttggaaagt 14111710  T

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Target: scaffold0110 (Bit Score: 31; Significance: 0.00000001; HSPs: 1)
Name: scaffold0110
Description:

Target: scaffold0110; HSP #1
Raw Score: 31; E-Value: 0.00000001
Query Start/End: Original strand, 65 - 119
Target Start/End: Original strand, 37901 - 37955
Alignment:
Q  65 gtttggatatttcactacggaatggaactaattttccactccattgtttggaaag 119  Q
    ||||||||||||||| | |||| |||  ||| |||||||||||||||||||||||    
T  37901 gtttggatatttcacgatggaacggagttaactttccactccattgtttggaaag 37955  T

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Target: scaffold0039 (Bit Score: 28; Significance: 0.0000007; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 28; E-Value: 0.0000007
Query Start/End: Original strand, 62 - 129
Target Start/End: Complemental strand, 57727 - 57660
Alignment:
Q  62 attgtttggatatttcactacggaatggaactaattttccactccattgtttggaaagtgaatggaac 129  Q
    |||||||||||| || |  | |||| ||||||| ||||||| ||||||||||||||||| || |||||    
T  57727 attgtttggatactttatgatggaacggaactagttttccattccattgtttggaaagttaacggaac 57660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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