View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5843-8 (Length: 135)
Name: Solexa-NF5843-8
Description: NF5843
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5843-8 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 48; Significance: 8e-19; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 8e-19
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 24453145 - 24453098
Alignment:
| Q |
88 |
tggatggaggccagtagcgaaacatcgatctaccaacaatgttcttga |
135 |
Q |
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| T |
24453145 |
tggatggaggccagtagcgaaacatcgatctaccaacaatgttcttga |
24453098 |
T |
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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 1412917 - 1412957
Alignment:
| Q |
8 |
tgtgttatcaaaaccagcaccaaaagcactagagtatgatc |
48 |
Q |
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| T |
1412917 |
tgtgttatcaaaaccagcaccaaaagtactagagtatgatc |
1412957 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 132
Target Start/End: Complemental strand, 46461240 - 46461196
Alignment:
| Q |
88 |
tggatggaggccagtagcgaaacatcgatctaccaacaatgttct |
132 |
Q |
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||||||||||||||||||||||||| || |||||||||||||||| |
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| T |
46461240 |
tggatggaggccagtagcgaaacatggacctaccaacaatgttct |
46461196 |
T |
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