View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: Solexa-NF5844-11 (Length: 140)
Name: Solexa-NF5844-11
Description: NF5844
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] Solexa-NF5844-11 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 136; Significance: 2e-71; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 136; E-Value: 2e-71
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 196135 - 195996
Alignment:
| Q |
1 |
ttggataatcttcttaaaatctttcaagtgttctacttcagccacttgagctatattttggggaagttgccattgaaaatctgacatctatcctatctat |
100 |
Q |
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| T |
196135 |
ttggataatcttcttaaaatctttcaagtgttctacttcagccacttgagctatgttttggggaagttgccattgaaaatctgacatctatcctatctat |
196036 |
T |
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| Q |
101 |
tttgttgtcacttgagacattgttaaaaagtgaccaccta |
140 |
Q |
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| T |
196035 |
tttgttgtcacttgagacattgttaaaaagtgaccaccta |
195996 |
T |
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